Syntheses, crystal structures, and quantum chemistry calculation of two Ni(Ⅱ) coordination polymers

Xiumei LI Yanju HUANG Bo LIU Yaru PAN

Citation:  Xiumei LI, Yanju HUANG, Bo LIU, Yaru PAN. Syntheses, crystal structures, and quantum chemistry calculation of two Ni(Ⅱ) coordination polymers[J]. Chinese Journal of Inorganic Chemistry, 2024, 40(10): 2031-2039. doi: 10.11862/CJIC.20240109 shu

两个Ni (Ⅱ)配位聚合物的合成、晶体结构和量子化学计算

    通讯作者: 黄艳菊, lixm20032006@163.com
    刘博, 112363305@qq.com
  • 基金项目:

    吉林省科技发展计划 JJKH20210541KJ

摘要: 在水热条件下, 通过混合Ni2+、3, 5-吡唑二甲酸(H3pdc)/对硝基苯甲酸和1, 4-双(咪唑基-1-基)丁烷(bib)分别制备了2种新的配位聚合物: [Ni(Hpdc)(bib)(H2O)]n (1)和{[Ni(bib)3](ClO4)2}n (2)。X射线晶体学测试表明, 配合物1是由六配位的Ni(Ⅱ)中心、bib和Hpdc2-配体构筑的二维网; 配合物 2是由Ni(Ⅱ)和bib配体构筑的二维网。此外, 利用Gaussian 16和VASP程序构建的PBE0/LANL2DZ方法, 对从配合物1的晶体结构中提取的"分子片段"进行了量子化学计算。

English

  • In recent years, the transition-metal coordination polymers (CPs) have received much attention not only in virtue of their intriguing structures, but also for their potential applications in catalysis[1-2], separation and storage[3-4], optical properties[5-7], magnetism[8-9], etc. The self-assembly method is frequently used and important in synthesis to construct desired transition-metal CPs with rational and controllable structures. Moreover, selecting appropriate reaction conditions and reactants also plays a vital role, because many factors affect the formation, such as the metal ions, the pH value, and the molar ratio of reactants, especially the selection of organic ligands.

    To the best of our knowledge, the aromatic carboxylate ligands have been widely used in the assembly process with their special advantages, in which the carboxyl groups can coordinate to metal ions through diverse coordination modes, such as terminal monodentate, chelating to one metal atom and bridging bidentate in different fashions[10]. Moreover, the carboxylate groups may be completely or partially deprotonated, and can act as hydrogen bond acceptors as well as hydrogen bond donors to assemble supramolecular structures; on the other hand, the existence of aromatic rings can promote the formation of π-π stacking interactions, which also play an important role in supramolecular networks. Further studies have shown that the current use of rigid carboxylic acid ligands, such as 3, 5-pyrazoledicarboxylic acid (H3pdc), p-nitrobenzoic acid, pyrazine-2, 3-dicarboxylic acid, and pyridine-3, 4-diarboxylic acid, has proved to be a wise decision. Many compounds with interesting structures[11-14] and properties have been synthesized. Encouraged by these factors, the rigid ligand H3pdc/p-nitrobenzoic acid has attracted our attention, which contains dicarboxylate/ carboxylate groups and aromatic rings, providing action sites for coordination and intermolecular forces to meet the coordination requirements in the assembly process. Moreover, among the transition-metal ions, Ni2+ ions are widely used in the synthesis of CPs due to their potential as electrochemical, catalytic, magnetic, and fluorescent active centers, and excellent coordination abilities with N-/O-donor ligands[15-17].

    Herein, with H3pdc/p-nitrobenzoic acid and 1, 4-bis(imidazol-1-ylmethyl)butane (bib) as starting materials, we obtained two CPs, [Ni(Hpdc)(bib)(H2O)]n (1) and {[Ni(bix)3](ClO4)2}n (2), which all have 2D structures. Meanwhile, the quantum-chemical calculations of 1 are also discussed in this paper.

    All starting raw materials were of analytical grade and obtained from commercial sources without further purification. Elemental analysis for C, N, and H was performed on a PE 240C elemental analyzer. The IR spectra (KBr pellets) were recorded on a Varian 640 FTIR spectrometer in the 400-4 000 cm-1 region. Thermogravimetry (TG) studies were carried out on a STA7300 analyzer under nitrogen at a heating rate of 10 ℃·min-1. Powder X-ray diffraction (PXRD) patterns were collected in a 2θ range of 5°-50° with a scan speed of 0.1 (°)·s-1 on a Bruker D8 Advance instrument using a Cu radiation (λ=0.154 18 nm, voltage: 40 kV, current: 40 mA) at room temperature.

    CP 1: A mixture of H3pdc (0.20 mmol, 0.034 g), Ni(NO3)2·6H2O (0.10 mmol, 0.029 g), and bib (0.20 mmol, 0.038 g) was dissolved in deionized water (15 mL). After continuously stirring for 30 min, a suitable amount of triethylamine was added to the above solution to adjust the pH value to 6.05. Then the solution was sealed up in a Parr Teflon-lined stainless-steel vessel (25 mL) under autogenous pressure, heated at 140 ℃ for 168 h, and cooled to room temperature over one day. Green columnar crystals of CP 1 were collected, washed with water, and air-dried (Yield: 21%). Elemental analysis Calcd. for C15H18N6NiO5(%): C, 42.79; H, 4.31; N, 19.96. Found(%): C, 42.21; H, 4.08; N, 19.65. IR (cm-1): 3 360w, 3 111w, 2 950w, 2 362w, 1 593s, 1 522w, 1 497w, 1 446w, 1 349s, 1 280w, 1 242 w, 1 222w, 1 155w, 1 107m, 1 086w, 1 035w, 1 018w, 1 005w, 944w, 899w, 830m, 805m, 740w, 664m, 631w, 544w, 522w.

    CP 2: A mixture of p‑nitrobenzoic acid (0.20 mmol, 0.0334 g), Ni(ClO4)2·6H2O (0.20 mmol, 0.073 g), and bib (0.20 mmol, 0.038 g) was dissolved in deionized water (15 mL). After continuously stirring for 30 min, a suitable amount of NaOH and 5 mL DMF was added into the above solution to adjust the pH value to 7.14. Then the mixture was sealed up in a Parr Teflon-lined stainless-steel vessel (25 mL) under autogenous pressure, heated at 120 ℃ for 168 h, and cooled to room temperature over one day. Green columnar crystals of CP 2 were collected, washed with water, and air-dried (Yield: 19%). Elemental analysis Calcd. for C30H42Cl2N12NiO8(%): C, 43.50; H, 5.11; N, 20.29. Found(%): C, 43.03; H, 4.89; N, 19.79. IR (cm-1): 3 422 w, 3 126m, 2 952w, 1 637w, 1 522s, 1 484w, 1 443w, 1 406w, 1 373m, 1 303w, 1 281m, 1 238s, 1 097s, 937m, 870w, 834m, 772m, 743w, 728w, 668m, 637w, 623s. It is worth noting that p-nitrobenzoic acid has no coordination with Ni(Ⅱ) ions, and ClO4- is involved in balancing the charge.

    Single-crystal X-ray diffraction data of CPs 1 and 2 were collected at 293(2) K on a Bruker SMART APEX Ⅱ CCD diffractometer with Mo (λ=0.071 073 nm). The related structures were solved by direct methods and refined by full-matrix least-squares on F2 using the SHELXTL-2018 program. All non-hydrogen atoms were refined anisotropically. All the hydrogen atoms were positioned geometrically and refined using a riding model. A summary of the crystallography data and structure refinements for CPs 1 and 2 is given in Table 1. The selected bond lengths and angles for 1 and 2 are listed in Table 2.

    Table 1

    Table 1.  Crystallography data and structure refinements for CPs 1 and 2
    下载: 导出CSV
    Parameter 1 2
    Empirical formula C15H18N6NiO5 C30H42Cl2N12NiO8
    Formula weight 421.06 828.37
    Crystal system Monoclinic Hexagonal
    Space group P21 R3
    a / nm 0.823 46(4) 1.393 14(7)
    b / nm 0.973 37(5) 1.393 14(7)
    c / nm 1.142 96(6) 1.724 73(12)
    β / (°) 108.738 0(10)
    Volume / nm3 0.867 56(8) 2.899 0(3)
    Z 2 3
    Dc / (g·cm-3) 1.612 1.423
    GOF 1.028 1.064
    Reflection collected, unique 3 536, 3 414 1 471, 1 317
    Rint 0.019 9 0.043 6
    R [I > 2σ(I)] 0.020 2 0.056 0
    wR 0.050 4 0.167 8

    Table 2

    Table 2.  Selected bond lengths (nm) and bond angles (º) for CPs 1 and 2
    下载: 导出CSV
    1
    Ni1—O1 0.209 00(12) Ni1—O2A 0.205 29(11) Ni1—O5 0.206 64(13)
    Ni1—N1 0.208 39(13) Ni1—N3 0.206 59(14) Ni1—N6B 0.210 50(15)
    O2A—Ni1—N3 87.67(6) O2A—Ni1—O5 96.40(5) N3—Ni1—O5 87.01(8)
    O2A—Ni1—N1 166.11(5) N3—Ni1—N1 93.61(6) O5—Ni1—N1 97.48(5)
    O2A—Ni1—O1 87.89(4) N3—Ni1—O1 88.53(7) O5—Ni1—O1 173.68(6)
    N1—Ni1—O1 78.32(5) N3—Ni1—N6B 178.40(6) O5—Ni1—N6B 91.93(7)
    N1—Ni1—N6B 85.33(6) O1—Ni1—N6B 92.43(6)
    2
    Ni1—N1 0.213 9(2) Ni1—N1A 0.213 9(2)
    N1A—Ni1—N1 180.00(12) N1A—Ni1—N1 89.00(9) N1B—Ni1—N1 91.00(9)
    Symmetry codes: A: 1-x, y-1/2, 2-z; B: x-1, y, z-1 for 1; A: 2-x, -y, 2-z; B: 1+y, 1-x+y, 2-z for 2.

    Single-crystal X-ray diffraction shows that the 2D structure of CP 1 is constructed from [Ni2(Hpdc)(H2O)2] subunits and bib linkers. The structural unit is composed of one Ni(Ⅱ) cation, one Hpdc2- anion, one coordinated water molecule and one flexible bib ligand (Fig. 1). The central Ni(Ⅱ) cation is surrounded by three nitrogen atoms from two different bib ligands, one Hpdc2- ligand and a pair of carboxylic oxygen atoms from two Hpdc2- anions and one coordinated water molecule to furnish a distorted octahedral coordination geometry. The Ni—N bond distances are in a range of 0.206 59(14)-0.210 50(15) nm and the Ni—O bond lengths lie in a range of 0.205 29(11)-0.209 00(12) nm. The bond angles around the Ni(Ⅱ) cation are in a range of 78.32(5)°-178.40(6)°. In 1, one μ3-Hpdc2- anion and two water molecules coordinate with two Ni(Ⅱ) cations to form a [Ni2(Hpdc)(H2O)2] subunit. The adjacent subunits are linked by μ2-bib ligands to generate a 2D CP. It is noteworthy that there are thirty-two number rings in the 2D network structure (Fig. 2). Further analysis of the crystal packing revealed hydrogen-bond interactions in carboxylate oxygen atoms, pyrazole-nitrogen atom, pyrazole-carbon atom, imidazole-carbon atoms and coordinated water molecules (Table 3). Moreover, there are π-π interactions in 1 between the pyrazole ring of the Hpdc2- ligand and the imidazole ring of the bib ligand. As shown in Fig. 2a, the centroid‑to‑ centroid distance between adjacent rings is 0.399 06(13) nm for the N1-N2-C4-C3-C2 pyrazole ring and N5-C13-N6-C14-C15 imidazole ring (Symmetry code: x-1, y, z-1). The perpendicular distance is 0.347 09(8) nm for the N1-N2-C4-C3-C2 pyrazole ring and N5-C13-N6-C14-C15 imidazole ring (Symmetry code: x-1, y, z-1), undoubtedly stabilize the structure of 1 and form a 3D supramolecular architecture (Fig. 3).

    Figure 1

    Figure 1.  Coordination environment (at 30% probability level) of the Ni(Ⅱ) center in CP 1

    Symmetry codes: A: 1-x, y-1/2, 2-z; B: x-1, y, z-1.

    Figure 2

    Figure 2.  (a) Two-dimensional network structure and (b) polyhedral view of the 2D network of CP 1

    Table 3

    Table 3.  Hydrogen bond parameters for CP 1
    下载: 导出CSV
    D—H···A d(D—H) / nm d(H···A) / nm d(D···A) / nm ∠DHA / (°)
    N2—H2···O3A 0.078(2) 0.195(2) 0.270 1(2) 159(2)
    O5—H5A···O3A 0.075(3) 0.199(3) 0.271 92(16) 166(4)
    O5—H5B···O1B 0.080(3) 0.205(2) 0.268 78(19) 137(2)
    C5—H3···O4C 0.091(2) 0.249(2) 0.337 1(3) 165(18)
    C6—H6···O1 0.097(4) 0.256(3) 0.301 8(3) 109(2)
    C8—H8···O5 0.090(3) 0.259(3) 0.301 8(3) 110(3)
    Symmetry codes: A: 1-x, -1/2+y, 1-z; B: 1-x, -1/2+y, 2-z; C: 1-x, 1/2+y, 1-z.

    Figure 3

    Figure 3.  View of the 3D supramolecular architecture of CP 1 along the a-axis

    The synthesized CP 2 appears as a green block crystal. Herein, the asymmetric unit is composed of one-sixth crystallographically Ni(Ⅱ) cation, half bib ligand, and one one-third free ClO4-, as shown in Fig. 4. The Ni2+ cation surrounded by six nitrogen atoms from different bib ligands is observed in 2. The bond lengths of Ni—N are 0.213 9(2) nm, and ∠N—Ni—N fall in a range of 89.00(9)°-180.00(12)°, indicating that Ni2+ ions are close to the positive octahedron. In 2, the flexible bib ligand shows trans-configuration and the dihedral angle between the two imidazole rings is 0°. In addition, six bib ligands linked the Ni ions to form a 2D network with a 36-number ring (Fig. 5). More significantly, free ClO4- is located in voids, as listed in Fig. 6, which may be used for adsorption in the material field. It is worth noting that the structure of CP 2 is similar to our reported Co complex[18], and the latter is also a 2D network with a 36-membered ring. Further analysis of the crystal packing revealed that [Ni(bib)3]2+ and ClO4- units form 3D supramolecular architectures through two hydrogen bonds: C1—H1A···O2 [C1···O2 0.331 68(8) nm] and C3—H3A···O1 [C3···O1 0.323 4(9) nm], undoubtedly stabilize the structure of CP 2.

    Figure 4

    Figure 4.  View of coordination environment (at 30% probability level) of Ni(Ⅱ) ion of CP 2

    Symmetry codes: A: 2-x, -y, 2-z; B: 1+y, 1-x+y, 2-z; C: 2-x+y, 1-x, z; D: x-y, x-1, 2-z; E: 1-y, x-y-1, z.

    Figure 5

    Figure 5.  View of 2D network structure with 36-number ring along the c-axis of CP 2

    Figure 6

    Figure 6.  View of 2D network structure with free ClO4- in voids along the a-axis of CP 2

    In the frequency range of 400 to 4 000 cm-1, the IR spectra of CPs 1 and 2 displayed the main inorganic and organic vibration absorption peaks (Fig.S1 and S2, Supporting information). The broad band of 3 360 cm-1 represents —OH stretching modes within the carboxyl group of 1[19]. The peaks observed between 1 593 and 1 349 cm-1 for CP 1 are assigned to the stretching bands of νas, COO and νs, COO, respectively[20]. The strong bands in a range of 740-631 cm-1 can be attributed to the νCN stretching of N-heterocyclic rings of the bib ligand in 1[21]. The broad bands of 1 238 and 1 097 cm-1 represent C=C stretching modes of bib ligands in 2[19]. The strong bands in a range of 728-623 cm-1 can be attributed to the νCN stretching of the N-heterocyclic rings of the bib ligand in 2[21].

    The phase purity of CPs 1 and 2 was determined by the comparison of their experimental PXRD patterns with the corresponding simulated patterns (calculated based on the single-crystal X-ray diffraction data) (Fig. 7). The above patterns have similar peak positions, indicating that the samples have good phase purity. The differences in intensity are in virtue of the preferred orientations of the powder samples.

    Figure 7

    Figure 7.  PXRD patterns of CPs 1 and 2

    Bottom: simulated; Top: experimental.

    TG curves were obtained from crystal samples to investigate the thermal stability of CPs 1 and 2. The samples were subjected to heating at a rate of 5 ℃·min-1 under a flowing nitrogen atmosphere. As illustrated in Fig.S3, the TG curve of 1 demonstrates that the CP remained stable up to 220 ℃, after which it underwent decomposition upon further heating. Similarly, the TG curve of 2 indicates that the CP remained stable up to 235 ℃, beyond which it underwent decomposition upon further heating.

    The UV spectra for CPs 1 and 2, and ligands H3pdc and bib have been investigated in the solid state. For the H3pdc ligand, there was no absorption band, and bib had one absorption band at about 274 nm, while the title CPs had one absorption band at about 220 and 235 nm, respectively (Fig. 8), which should be assigned to the nπ* transition of bib and the charge transfer transition[22].

    Figure 8

    Figure 8.  UV spectra of CPs 1 and 2

    The calculations were performed based on density functional theory (DFT) using Gaussian 16 and VASP software for the periodic system. The calculations were performed on "molecular fragments" extracted from the crystal structure of CP 1. The PBE0[23-24] hybrid functional and the LANL2DZ basis set[25] were employed for the NBO analysis. The generalized gradient approximation (GGA) in the scheme proposed by the Perdew-Burke‑Ernzerhof (PBE) functional was used to deal with the electronic exchange correlation.

    Table 4 presents the selected natural bond orbital (NBO) bond orders (in atomic units), Wiberg bond indices, natural electron configurations, and natural atomic charges of CP 1. Analysis of the results reveals that the electronic configurations of the Ni(Ⅱ) ion, nitrogen, and oxygen atoms are as follows: Ni(Ⅱ) ion-4s0.263d8.515p0.33, nitrogen-2s1.33-1.362p3.60-4.11, and oxygen-2s1.55-1.682p5.01-5.17. Based on these findings, we can infer that the coordination between the Ni(Ⅱ) ions and nitrogen/oxygen atoms primarily occurs through the 4s, 3d, and 5p orbitals. Nitrogen atoms form coordination bonds with the Ni(Ⅱ) ion utilizing the 2s and 2p orbitals, while all oxygen atoms contribute electrons from their 2s and 2p orbitals to form coordination bonds with the Ni(Ⅱ) ion. Therefore, the Ni(Ⅱ) ion obtains some electrons from two N atoms of the bib ligand, one N atom of the Hpdc2- ligand, two O atoms of the Hpdc2- ligand, and one coordinated water molecule[26-27]. Consequently, in the light of valence-bond theory, the atomic net charge distribution and NBO bond orders of 1 (Table 4) show the obvious covalent interaction between the coordinated atoms and Ni(Ⅱ) ion. The different NBO bond orders of Ni—O and Ni—N make different bond lengths for them[27], which is consistent with the crystal structure data of 1.

    Table 4

    Table 4.  Selected atom net charges, electron configurations, Wiberg bond indexes, and NBO bond orders of CP 1
    下载: 导出CSV
    Atom Net charge Electron configuration Bond Wiberg bond index NBO bond order
    Ni1 0.728 93 [core]4s0.263d8.515p0.33
    O1 -0.713 62 [core]2s1.682p5.02 Ni1—O1 0.301 2 0.289 7
    O2A -0.673 95 [core]2s1.662p5.01 Ni1—O2A 0.371 3 0.312 2
    O5 -0.747 52 [core]2s1.552p5.17 Ni1—O5 0.233 7 0.253 7
    N1 -0.287 28 [core]2s1.362p3.90 Ni1—N1 0.276 6 0.328 0
    N3 -0.458 80 [core]2s1.332p4.11 Ni1—N3 0.429 0 0.378 7
    N6B -0.466 35 [core]2s1.342p4.11 Ni1—N6B 0.394 0 0.367 7

    As depicted in Fig. 9, it is evident that the lowest unoccupied molecular orbital (LUMO) of CP 1 is predominantly composed of the Ni(Ⅱ) ion and the bib ligand. Conversely, the highest occupied molecular orbital (HOMO) primarily consists of the Ni(Ⅱ) ion and the Hpdc2- ligand. Therefore, based on the observed molecular orbital contours, it is possible to infer the occurrence of ligand-to-ligand charge transfer (LLCT) within CP 1.

    Figure 9

    Figure 9.  Frontier molecular orbitals of CP 1

    The calculated total and orbital-projected density of states (DOS) for the primitive cell of CP 1 is shown in Fig. 10. The bandgap of the material was 1.081 eV. The valence band is mainly occupied by Op and Np orbitals, while the conduction band is mainly occupied by Nid and Np orbitals. The DOS plot shows a sharp jagged shape, indicating the relative localization of electron orbitals.

    Figure 10

    Figure 10.  Calculated total and orbital-projected DOS for the primitive cell of CP 1

    In summary, we have provided two new nickel CPs, [Ni(Hpdc)(bib)(H2O)]n (1) and {[Ni(bib)3](ClO4)2}n (2), by mixing Ni2+, 3, 5-pyrazoledicarboxylic acid (H3pdc)/p-nitrobenzoic acid and 1, 4-bis(imidazol-1- ylmethyl)butane (bib). In CP 1, there is a 2D network constructed by six-coordinated Ni(Ⅱ) centers, bib and Hpdc2- ligands, while a 2D network with a 36‑ membered ring is built by Ni(Ⅱ) and bib ligands in 2. Meanwhile, the quantum-chemical calculations of 1 are also discussed in this manuscript.


    Supporting information is available at http://www.wjhxxb.cn
    1. [1]

      Lee J Y, Farha O K, Roberts J, Scheidt K A, Nguyen S T, Hupp J T. Metal-organic framework materials as catalysts[J]. Chem. Soc. Rev., 2009, 38:  1450-1459. doi: 10.1039/b807080f

    2. [2]

      Li S, Sun J Y, Liu G C, Zhang S, Zhang Z, Wang X L. A new keggin-type polyoxometallate-based bifunctional catalyst for trace detection and pH-universal photodegradation of phenol[J]. Chin. Chem. Lett., 2024, 35:  109148. doi: 10.1016/j.cclet.2023.109148

    3. [3]

      Zhang Z J, Xiang S C, Chen B L. Microporous metal-organic frame-works for acetylene storage and separation[J]. CrystEngComm, 2011, 13:  5983-5992. doi: 10.1039/c1ce05437f

    4. [4]

      Chang Z, Zhang D S, Chen Q, Bu X H. Microporous organic polymers for gas storage and separation applications[J]. Phys. Chem. Chem. Phys., 2013, 15:  5430-5442. doi: 10.1039/c3cp50517k

    5. [5]

      Guan Q L, Han C, Bai F Y, Liu J, Xin Y H, Shi Z, Sun L X. Bismuth-MOF based on tetraphenylethylene derivative as a luminescent sensor with turn-off/on for application of Fe3+ detection in serum and bioim-aging, as well as emissive spectra analysis by TRES[J]. Sens. Actuator B-Chem., 2020, 325:  128767. doi: 10.1016/j.snb.2020.128767

    6. [6]

      吕莹, 李秀梅, 黄艳菊, 刘博, 周实. 基于琥珀酸配体的锌/镉配合物的合成、结构及性质[J]. 无机化学学报, 2022,38,(12): 2511-2520. LÜ Y, LI X M, YUANG Y J, LIU B, ZHOU S. Synthesis, structure and properties of zinc/cadmium complexes based on succinic acid ligands[J]. Chinese J. Inorg. Chem., 2022, 38(12):  2511-2520.

    7. [7]

      Liu G C, Li Y, Chi J, Xu N, Wang X L, Lin H Y, Chen Y Q. Multi-functional fluorescent responses of cobalt complexes derived from functionalized amide-bridged ligand[J]. Dyes Pigment., 2020, 174:  108064. doi: 10.1016/j.dyepig.2019.108064

    8. [8]

      Colacio E, Ghazi M, Kivekäs R, Moreno J M. Helical-chain copper (Ⅱ) complexes and a cyclic tetranuclear copper (Ⅱ) complex with single syn-anti carboxylate bridges and ferromagnetic exchange interactions[J]. Inorg. Chem., 2000, 39:  2882-2890. doi: 10.1021/ic991209k

    9. [9]

      Kurmoo M. Magnetic metal-organic frameworks[J]. Chem. Soc. Rev., 2009, 38:  1353-1379. doi: 10.1039/b804757j

    10. [10]

      Sun D, Li Y H, Hao H J, Liu F J, Zhao Y, Huang R B, Zheng L S. Syntheses, structures and photoluminescent properties of a series of Ag(Ⅰ) coordination architectures based on 2, 4-diamino-6-methyl-1, 3, 5-triazine and dicarboxylates: From a 0D discrete molecule to a 3D infinite network[J]. CrystEngComm, 2011, 13:  6431-6441. doi: 10.1039/c1ce05683b

    11. [11]

      Chen Y M, Zheng L N, She S X, Chen Z, Hu B, Li Y H. Two novel heterometallic Cu-Sr coordination polymers based on 3, 5-pyr-azoledicarboxylic acid: Synthesis, crystal structures and magnetic properties[J]. Dalton Trans., 2011, 18(40):  4970-4975.

    12. [12]

      李秀梅, 潘亚茹, 刘博, 周实. 两个由双咪唑基配体构筑的镉配合物的合成、晶体结构及理论计算[J]. 无机化学学报, 2019,35,(7): 1275-1282. LI X M, PAN Y R, LIU B, ZHOU S. Syntheses, crystal structures and theoretical calculations of two cadmium (Ⅱ) complexes assembled by bis (imidazol) ligands[J]. Chinese J. Inorg. Chem., 2019, 35(7):  1275-1282.

    13. [13]

      Gao Y X, Li X M, Zhou S, Liu B. Synthesis, structure and theoretical calculation of metal coordination polymers with pyrazine-2, 3-dicar-boxylic acid and 3-(2-pyridyl) pyrazole as co-ligands[J]. Chin. J. Struct. Chem., 2021, 40(6):  753-758.

    14. [14]

      Zhan P Y, Feng W Z, Li X M, Liu B. A new pyridine-3, 4-dicarboxylic acid bridged zinc (Ⅱ) coordination complex: Crystal structure, quan-tum chemistry and luminescence property[J]. Chin. J. Struct. Chem., 2021, 40(8):  1039-1046.

    15. [15]

      Li X M, Wang Z T, Valtchev V, Fang Q R, Pan Y R. Syntheses, crystal structures and theoretical calculations of two nickel, zinc coordi-nation polymers with 4-nitrophthalic acid and bis (imidazol) ligands[J]. J. Inorg. Organomet. Polym., 2020, 30(6):  477-485.

    16. [16]

      Pan Y R, Li X M, Ji J Y, Wang Q W. Synthesis, crystal structure, and theoretical calculations of two cobalt, nickel coordination poly-mers with 5-nitroisophthalic acid and bis (imidazol) ligands[J]. Aust. J. Chem., 2016, 69(6):  1296-1304.

    17. [17]

      Jana K, Maity T, Debnath S C, Samanta B C, Seth S K. Octahedral Ni (Ⅱ) complex with new NNO donor Schiff base ligand: Synthesis, struc-ture and Hirschfeld surface[J]. J. Mol. Struct., 2017, 1130:  844-854. doi: 10.1016/j.molstruc.2016.10.089

    18. [18]

      李秀梅, 杨佳琦, 潘亚茹, 刘博, 周实. 两个基于双咪唑基配体的Co (Ⅱ)/Cu(Ⅰ)配合物的合成、晶体结构及荧光性质[J]. 无机化学学报, 2020,36,(4): 730-736. LI X M, YANG J Q, PAN Y R, LIU B, ZHOU S. Syntheses, crystal structures and photoluminescent properties of two Co (Ⅱ)/Cu(Ⅰ) coordi-nation polymers based on bis (imidazol) ligands[J]. Chinese J. Inorg. Chem., 2020, 36(4):  730-736.

    19. [19]

      Zhu L N, Deng Z P, Ng S W, Huo L H, Gao S. Cd (Ⅱ) coordination polymers constructed from bis (pyridyl) ligands with an asymmetric spacer in chelating mode and diverse organic dicarboxylates: Synthe-ses, structural evolutions and properties[J]. Dalton Trans., 2019, 48(22):  7589-7601. doi: 10.1039/C9DT00840C

    20. [20]

      Bellamy L J. The infrared spectra of complex molecules. New York: Wiley, 1958.

    21. [21]

      Dolensky B, Konvalinka R, Jakubek M, Kral V. Identification of intramolecular hydrogen bonds as the origin of malfunctioning of multitopic receptors[J]. J. Mol. Struct., 2013, 1035:  124-128. doi: 10.1016/j.molstruc.2012.09.040

    22. [22]

      Mohamed G G, El-Gamel N E A. Synthesis, investigation and spec-troscopic characterization of piroxicam ternary complexes of Fe (Ⅱ), Fe (Ⅲ), Co (Ⅱ), Ni (Ⅱ), Cu (Ⅱ) and Zn (Ⅱ) with glycine and DL-phenylala-nine[J]. Spectroc. Acta Pt. A-Molec. Biomolec. Spectr., 2004, 60:  3141-3154. doi: 10.1016/j.saa.2004.01.035

    23. [23]

      Ernzerhof M, Scuseria G E. Assessment of the Perdew-Burke-Ernzer-hof exchange-correlation functional[J]. J. Chem. Phys., 1999, 110:  5029-5036. doi: 10.1063/1.478401

    24. [24]

      Adamo C, Barone V. Toward reliable density functional methods without adjustable parameters: The PBE0 model[J]. J. Chem. Phys., 1999, 110:  6158-6170. doi: 10.1063/1.478522

    25. [25]

      Dunning T H, Hay P J. Gaussian basis sets for molecular calcula-tions//Schaefer H F. Methods of electronic structure theory. New York: Plenum Press, 1977: 1-27

    26. [26]

      Wang L, Zhao J, Ni L, Yao J. Synthesis, structure, fluorescence prop-erties, and natural bond orbital (NBO) analysis of two metal [Eu, Co] coordination polymers containing 1, 3-benzenedicarboxylate and 2-(4-methoxyphenyl)-1H-imidazo[4, 5-f]-[1, 10] phenanthroline ligands[J]. Z. Anorg. Allg. Chem., 2012, 638(1):  224-230. doi: 10.1002/zaac.201100345

    27. [27]

      李章朋, 邢永恒, 张元红, 白凤英, 曾小庆, 葛茂发. 蝎型钒氧苯甲酸配合物的合成、结构及量化计算[J]. 物理化学学报, 2009,25,(4): 741-746. LI Z P, XING Y H, ZHANG Y H, BAI F Y, ZENG X Q, GE M F. Synthesis, structure and quantification of scorpion vanadium oxyben-zoic acid complex[J]. Acta Phys.-Chim. Sin., 2009, 25(4):  741-746.

  • Figure 1  Coordination environment (at 30% probability level) of the Ni(Ⅱ) center in CP 1

    Symmetry codes: A: 1-x, y-1/2, 2-z; B: x-1, y, z-1.

    Figure 2  (a) Two-dimensional network structure and (b) polyhedral view of the 2D network of CP 1

    Figure 3  View of the 3D supramolecular architecture of CP 1 along the a-axis

    Figure 4  View of coordination environment (at 30% probability level) of Ni(Ⅱ) ion of CP 2

    Symmetry codes: A: 2-x, -y, 2-z; B: 1+y, 1-x+y, 2-z; C: 2-x+y, 1-x, z; D: x-y, x-1, 2-z; E: 1-y, x-y-1, z.

    Figure 5  View of 2D network structure with 36-number ring along the c-axis of CP 2

    Figure 6  View of 2D network structure with free ClO4- in voids along the a-axis of CP 2

    Figure 7  PXRD patterns of CPs 1 and 2

    Bottom: simulated; Top: experimental.

    Figure 8  UV spectra of CPs 1 and 2

    Figure 9  Frontier molecular orbitals of CP 1

    Figure 10  Calculated total and orbital-projected DOS for the primitive cell of CP 1

    Table 1.  Crystallography data and structure refinements for CPs 1 and 2

    Parameter 1 2
    Empirical formula C15H18N6NiO5 C30H42Cl2N12NiO8
    Formula weight 421.06 828.37
    Crystal system Monoclinic Hexagonal
    Space group P21 R3
    a / nm 0.823 46(4) 1.393 14(7)
    b / nm 0.973 37(5) 1.393 14(7)
    c / nm 1.142 96(6) 1.724 73(12)
    β / (°) 108.738 0(10)
    Volume / nm3 0.867 56(8) 2.899 0(3)
    Z 2 3
    Dc / (g·cm-3) 1.612 1.423
    GOF 1.028 1.064
    Reflection collected, unique 3 536, 3 414 1 471, 1 317
    Rint 0.019 9 0.043 6
    R [I > 2σ(I)] 0.020 2 0.056 0
    wR 0.050 4 0.167 8
    下载: 导出CSV

    Table 2.  Selected bond lengths (nm) and bond angles (º) for CPs 1 and 2

    1
    Ni1—O1 0.209 00(12) Ni1—O2A 0.205 29(11) Ni1—O5 0.206 64(13)
    Ni1—N1 0.208 39(13) Ni1—N3 0.206 59(14) Ni1—N6B 0.210 50(15)
    O2A—Ni1—N3 87.67(6) O2A—Ni1—O5 96.40(5) N3—Ni1—O5 87.01(8)
    O2A—Ni1—N1 166.11(5) N3—Ni1—N1 93.61(6) O5—Ni1—N1 97.48(5)
    O2A—Ni1—O1 87.89(4) N3—Ni1—O1 88.53(7) O5—Ni1—O1 173.68(6)
    N1—Ni1—O1 78.32(5) N3—Ni1—N6B 178.40(6) O5—Ni1—N6B 91.93(7)
    N1—Ni1—N6B 85.33(6) O1—Ni1—N6B 92.43(6)
    2
    Ni1—N1 0.213 9(2) Ni1—N1A 0.213 9(2)
    N1A—Ni1—N1 180.00(12) N1A—Ni1—N1 89.00(9) N1B—Ni1—N1 91.00(9)
    Symmetry codes: A: 1-x, y-1/2, 2-z; B: x-1, y, z-1 for 1; A: 2-x, -y, 2-z; B: 1+y, 1-x+y, 2-z for 2.
    下载: 导出CSV

    Table 3.  Hydrogen bond parameters for CP 1

    D—H···A d(D—H) / nm d(H···A) / nm d(D···A) / nm ∠DHA / (°)
    N2—H2···O3A 0.078(2) 0.195(2) 0.270 1(2) 159(2)
    O5—H5A···O3A 0.075(3) 0.199(3) 0.271 92(16) 166(4)
    O5—H5B···O1B 0.080(3) 0.205(2) 0.268 78(19) 137(2)
    C5—H3···O4C 0.091(2) 0.249(2) 0.337 1(3) 165(18)
    C6—H6···O1 0.097(4) 0.256(3) 0.301 8(3) 109(2)
    C8—H8···O5 0.090(3) 0.259(3) 0.301 8(3) 110(3)
    Symmetry codes: A: 1-x, -1/2+y, 1-z; B: 1-x, -1/2+y, 2-z; C: 1-x, 1/2+y, 1-z.
    下载: 导出CSV

    Table 4.  Selected atom net charges, electron configurations, Wiberg bond indexes, and NBO bond orders of CP 1

    Atom Net charge Electron configuration Bond Wiberg bond index NBO bond order
    Ni1 0.728 93 [core]4s0.263d8.515p0.33
    O1 -0.713 62 [core]2s1.682p5.02 Ni1—O1 0.301 2 0.289 7
    O2A -0.673 95 [core]2s1.662p5.01 Ni1—O2A 0.371 3 0.312 2
    O5 -0.747 52 [core]2s1.552p5.17 Ni1—O5 0.233 7 0.253 7
    N1 -0.287 28 [core]2s1.362p3.90 Ni1—N1 0.276 6 0.328 0
    N3 -0.458 80 [core]2s1.332p4.11 Ni1—N3 0.429 0 0.378 7
    N6B -0.466 35 [core]2s1.342p4.11 Ni1—N6B 0.394 0 0.367 7
    下载: 导出CSV
  • 加载中
计量
  • PDF下载量:  0
  • 文章访问数:  94
  • HTML全文浏览量:  10
文章相关
  • 发布日期:  2024-10-10
  • 收稿日期:  2024-04-03
  • 修回日期:  2024-07-03
通讯作者: 陈斌, bchen63@163.com
  • 1. 

    沈阳化工大学材料科学与工程学院 沈阳 110142

  1. 本站搜索
  2. 百度学术搜索
  3. 万方数据库搜索
  4. CNKI搜索

/

返回文章