缓激肽多肽片段间非共价作用的质谱研究

引用本文: 陈琛, 储艳秋, 戴新华, 方向, 丁传凡. 缓激肽多肽片段间非共价作用的质谱研究[J]. 物理化学学报, 2013, 29(06): 1336-1343. doi: 10.3866/PKU.WHXB201303155 shu

Citation: CHEN Chen, CHU Yan-Qiu, DAI Xin-Hua, FANG Xiang, DING Chuan-Fan. Investigation of the Non-Covalent Interactions between Fragment Peptides of Bradykinin by Mass Spectrometry[J]. Acta Physico-Chimica Sinica, 2013, 29(06): 1336-1343. doi: 10.3866/PKU.WHXB201303155 shu

缓激肽多肽片段间非共价作用的质谱研究

陈琛 ^1, ,
储艳秋 ^1, ,
戴新华 ^2, ,
方向 ^2, ,
丁传凡 ^1,

基金项目:
国家科技支撑计划(2009BAK60B03) (2009BAK60B03)

国家重大科学仪器设备开发专项(2011YQ090005)资助项目 (2011YQ090005)

摘要:

以缓激肽(R¹P²P³G⁴F⁵S⁶P⁷F⁸R⁹)分子作为研究模型, 用电喷雾质谱研究缓激肽分子碎片片段之间的非共价相互作用, 探讨了影响气相多肽分子构象稳定的氢键作用. 合成了与缓激肽分子在位置1断裂形成的碎片一致的RPPGFS和PFR多肽序列, 与在位置2断裂形成碎片一致的RPPGF和SPFR多肽, 以及N端或者C端去掉精氨酸的相应碎片多肽. 实验结果表明, 上述两个断裂位置产生的碎片多肽分别进行反应后, 都能发生非共价作用. 在断裂方式1下, PFR多肽在去掉C端的精氨酸R后, 与其他大多数多肽不发生非共价结合, 表明PFR中的R在缓激肽气相分子的构象中发挥重要的作用. 而在断裂方式2下, 去掉N端或者C端精氨酸的多肽之间都存在非共价结合, 即C端带有丝氨酸的SPF或SPFR多肽碎片仍然可以与N端碎片发生氢键结合, 表明丝氨酸很可能处于转角的位置. 通过对碰撞诱导解离(CID)的碰撞能量分析, 发现多肽RPPGFS和PFR, 以及多肽RPPGF和SPFR之间氢键结合较强, 而同时去掉N端和C端精氨酸得到的多肽之间的氢键结合较弱. 质谱滴定法定量测得的RPPGFS和PFR的结合常数为3.53×10³, 与RPPGF和SPFR的结合常数(3.16×10³)相接近,它们均大于去除精氨酸的PPGF和SPF的结合常数(1.25×10³). 质谱滴定实验结果进一步确认了碰撞诱导解离的分析结果, 表明缓激肽分子两端的精氨酸之间的氢键作用是气相缓激肽分子构象稳定的重要因素之一.

关键词:

English

Investigation of the Non-Covalent Interactions between Fragment Peptides of Bradykinin by Mass Spectrometry

1.
1 Institute of Laser Chemistry, Department of Chemistry, Fudan University, Shanghai 200433, P. R. China;
2 Chemical Metrology & Analytical Science Division, National Institute of Metrology, Beijing 100013, P. R. China
Received Date: 06 February 2013
Available Online: 17 May 2013
Fund Project:
国家科技支撑计划(2009BAK60B03)

国家重大科学仪器设备开发专项(2011YQ090005)资助项目

Abstract:

To explore the important factors affecting the stability of gas phase bradykinin (R¹P²P³G⁴F⁵S⁶P⁷F⁸R⁹), the non-covalent interactions between fragment peptides of bradykinin were investigated by electrospray ionization mass spectrometry (ESI-MS). The fracture sites are S6P7 (mode 1) and F5S6 (mode 2). The fragment peptides of bradykinin and its des-arginine analogues were synthesized. ESI-MS results showed that the fragment peptides of bradykinin obtained in the two modes can easily react by non-covalent interactions. In fracture mode 1, when R⁹ was removed, the peptide PF seldom bound to any other fragment peptide. While in fracture mode 2, non-covalent binding still occurred between fragment peptides when either R1 or R9 was removed, which indicates that serine is likely to be at the position of the β-turn. The collision induced dissociation (CID) revealed that the binding strength between RPPGFS and PFR, or RPPGF and SPFR, is stronger than for the peptides without R. For the complexes of RPPGFS with PFR, and RPPGF with SPFR, the binding constant (K_st) values determined by mass spectrometric titrations were 3.53×10³ and 3.16×10³, respectively, which are greater than the K_st value (1.25×10³) of the complexes of PPGF with SPF. The mass spectrometric titrations confirmed the results from CID, indicating that the hydrogen bonds between the arginine residues of the two terminals of bradykinin play an important role in stabilizing the conformation of gas phase bradykinin.

Key words:

1. [1]
  
  (1) Aebersold, R.; odlett, D. R. Chem. Rev. 2001, 101, 269. doi: 10.1021/cr990076h
  (1) Aebersold, R.; odlett, D. R. Chem. Rev. 2001, 101, 269. doi: 10.1021/cr990076h
2. [2]
  (2) Aebersold, R.; Mann, M. Nature 2003, 422, 198. doi: 10.1038/nature01511(2) Aebersold, R.; Mann, M. Nature 2003, 422, 198. doi: 10.1038/nature01511
3. [3]
  (3) Matysiak, S.; Debenedetti, P. G.; Rossky, P. J. J. Phys. Chem. B2012, 116, 8095. doi: 10.1021/jp3039175(3) Matysiak, S.; Debenedetti, P. G.; Rossky, P. J. J. Phys. Chem. B2012, 116, 8095. doi: 10.1021/jp3039175
4. [4]
  (4) Bolen, D.W.; Rose, G. D. Annu. Rev. Biochem. 2008, 77, 339.doi: 10.1146/annurev.biochem.77.061306.131357(4) Bolen, D.W.; Rose, G. D. Annu. Rev. Biochem. 2008, 77, 339.doi: 10.1146/annurev.biochem.77.061306.131357
5. [5]
  (5) Hatahet, F.; Ruddock, L.W. Antioxid. Redox Sign. 2009, 11,2807. doi: 10.1089/ars.2009.2466(5) Hatahet, F.; Ruddock, L.W. Antioxid. Redox Sign. 2009, 11,2807. doi: 10.1089/ars.2009.2466
6. [6]
  (6) Rinner, O.; Muller, L. N.; Hubalek, M. Nat. Biotechnol. 2007,25, 345. doi: 10.1038/nbt1289(6) Rinner, O.; Muller, L. N.; Hubalek, M. Nat. Biotechnol. 2007,25, 345. doi: 10.1038/nbt1289
7. [7]
  (7) Chu, Y. Q.; Pan, T. T.; Dai, Z. Y.; Yu, Z.W.; Zheng, S. B.; Ding,C. F. Acta Phys. -Chim. Sin. 2008, 24, 1981. [储艳秋, 潘婷婷,戴兆云, 俞卓伟, 郑松柏, 丁传凡. 物理化学学报, 2008, 24,1981.] doi: 10.3866/PKU.WHXB20081108(7) Chu, Y. Q.; Pan, T. T.; Dai, Z. Y.; Yu, Z.W.; Zheng, S. B.; Ding,C. F. Acta Phys. -Chim. Sin. 2008, 24, 1981. [储艳秋, 潘婷婷,戴兆云, 俞卓伟, 郑松柏, 丁传凡. 物理化学学报, 2008, 24,1981.] doi: 10.3866/PKU.WHXB20081108
8. [8]
  (8) Murray, J. K.; Gellman, S. H. Biopolymers 2007, 88, 657.(8) Murray, J. K.; Gellman, S. H. Biopolymers 2007, 88, 657.
9. [9]
  (9) Whitehouse, C. M.; Dreyer, R. N.; Yamashita, M. T.; Fenn, J. B.Anal. Chem. 1985, 57, 675. doi: 10.1021/ac00280a023(9) Whitehouse, C. M.; Dreyer, R. N.; Yamashita, M. T.; Fenn, J. B.Anal. Chem. 1985, 57, 675. doi: 10.1021/ac00280a023
10. [10]
  (10) Qin, Y. J.;Wei, S. G.;Wang, X. L.; Yang, F.;Wang, B.; Guo, X.H. Chem. J. Chin. Univ. 2011, 32, 2748. [秦玉娇, 魏士刚, 王晓录, 杨帆, 汪兵, 国新华. 高等学校化学学报, 2011, 32,2748.](10) Qin, Y. J.;Wei, S. G.;Wang, X. L.; Yang, F.;Wang, B.; Guo, X.H. Chem. J. Chin. Univ. 2011, 32, 2748. [秦玉娇, 魏士刚, 王晓录, 杨帆, 汪兵, 国新华. 高等学校化学学报, 2011, 32,2748.]
11. [11]
  (11) Karas, M.; Hillenkamp, F. Anal. Chem. 1988, 60, 2299. doi: 10.1021/ac00171a028(11) Karas, M.; Hillenkamp, F. Anal. Chem. 1988, 60, 2299. doi: 10.1021/ac00171a028
12. [12]
  (12) Beavis, R. C.; Chait, B. T. Methods Enzymol.1996, 270, 519.doi: 10.1016/S0076-6879(96)70024-1(12) Beavis, R. C.; Chait, B. T. Methods Enzymol.1996, 270, 519.doi: 10.1016/S0076-6879(96)70024-1
13. [13]
  (13) Wang, Q.; Chu, Y. Q.; Zhang, K.; Dai, X. H.; Fang, X.; Ding, C.F. Acta Phys. -Chim. Sin. 2012, 28, 971. [王青, 储艳秋,张开, 戴新华, 方向, 丁传凡. 物理化学学报, 2012, 28,971.] doi: 10.3866/PKU.WHXB201112201(13) Wang, Q.; Chu, Y. Q.; Zhang, K.; Dai, X. H.; Fang, X.; Ding, C.F. Acta Phys. -Chim. Sin. 2012, 28, 971. [王青, 储艳秋,张开, 戴新华, 方向, 丁传凡. 物理化学学报, 2012, 28,971.] doi: 10.3866/PKU.WHXB201112201
14. [14]
  (14) Lorenzen, K.; Versluis, C.; van Duijn, E.; van den Heuvel, R.;Heck, A. Int. J. Mass Spectrom. 2007, 268, 198. doi: 10.1016/j.ijms.2007.06.012(14) Lorenzen, K.; Versluis, C.; van Duijn, E.; van den Heuvel, R.;Heck, A. Int. J. Mass Spectrom. 2007, 268, 198. doi: 10.1016/j.ijms.2007.06.012
15. [15]
  (15) Syka, J. E. P.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.;Hunt, D. F. P. Natl. Acad. Sci. U. S. A. 2004, 101 (26), 9528.doi: 10.1073/pnas.0402700101(15) Syka, J. E. P.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.;Hunt, D. F. P. Natl. Acad. Sci. U. S. A. 2004, 101 (26), 9528.doi: 10.1073/pnas.0402700101
16. [16]
  (16) Koomen, J. M.; Ruotolo, B. T.; Gillig, K. J.; Russel, D. H.J. Am. Mass Spectrom. 2002, 13, 166. doi: 10.1016/S1044-0305(01)00348-8(16) Koomen, J. M.; Ruotolo, B. T.; Gillig, K. J.; Russel, D. H.J. Am. Mass Spectrom. 2002, 13, 166. doi: 10.1016/S1044-0305(01)00348-8
17. [17]
  (17) Ianzer, D.; Konno, K.; Marques-Porto, R.; Portaro, F.; Stocklin,R.; Pimenta, D. C. Peptides 2004, 25, 1085. doi: 10.1016/j.peptides.2004.04.006(17) Ianzer, D.; Konno, K.; Marques-Porto, R.; Portaro, F.; Stocklin,R.; Pimenta, D. C. Peptides 2004, 25, 1085. doi: 10.1016/j.peptides.2004.04.006
18. [18]
  (18) Marshall, P.; Heudi, O.; Mckeown, S.; Amour, A.; Abou-Shakra,F. Rapid Commun. Mass Spectrom. 2002, 16, 220.(18) Marshall, P.; Heudi, O.; Mckeown, S.; Amour, A.; Abou-Shakra,F. Rapid Commun. Mass Spectrom. 2002, 16, 220.
19. [19]
  (19) Pierson, N. A.; Chen, L.; Valentine, S. J.; Russell, D. H.;Clemmer, D. E. J. Am. Soc. Mass Spectrom. 2011, 133, 13810.(19) Pierson, N. A.; Chen, L.; Valentine, S. J.; Russell, D. H.;Clemmer, D. E. J. Am. Soc. Mass Spectrom. 2011, 133, 13810.
20. [20]
  (20) Kakoki, M.; McGarrah, R.W.; Kim, H. S.; Smithies, O. P. Natl. Acad. Sci. U. S. A. 2007, 104, 7576. doi: 10.1073/pnas.0701617104(20) Kakoki, M.; McGarrah, R.W.; Kim, H. S.; Smithies, O. P. Natl. Acad. Sci. U. S. A. 2007, 104, 7576. doi: 10.1073/pnas.0701617104
21. [21]
  (21) Pallante, G. A.; Cassady, C. J. Int. J. Mass Spectrom. 2002, 219,115. doi: 10.1016/S1387-3806(02)00556-0(21) Pallante, G. A.; Cassady, C. J. Int. J. Mass Spectrom. 2002, 219,115. doi: 10.1016/S1387-3806(02)00556-0
22. [22]
  (22) Lopez, J. J; Shukla, A. K.; Reinhart, C. Angew. Chem. Int. Edit.2008, 7, 1668.(22) Lopez, J. J; Shukla, A. K.; Reinhart, C. Angew. Chem. Int. Edit.2008, 7, 1668.
23. [23]
  (23) Wyttenbach, T.; vonHelden, G.; Bowers, M. T. J. Am. Chem. Soc. 1996, 118 (35), 8355. doi: 10.1021/ja9535928(23) Wyttenbach, T.; vonHelden, G.; Bowers, M. T. J. Am. Chem. Soc. 1996, 118 (35), 8355. doi: 10.1021/ja9535928
24. [24]
  (24) Rodriquez, C. F.; Orlova, G.; Guo, Y. Z.; Li, X. M.; Siu, C. K.;Hopkinson, A. C.; Siu, K.W. M. J. Phys. Chem. B 2006, 110 (14), 7528. doi: 10.1021/jp046015r(24) Rodriquez, C. F.; Orlova, G.; Guo, Y. Z.; Li, X. M.; Siu, C. K.;Hopkinson, A. C.; Siu, K.W. M. J. Phys. Chem. B 2006, 110 (14), 7528. doi: 10.1021/jp046015r
25. [25]
  (25) Russell, D. H.; Barbacci, D. C.; Gimon-Kinsel, M. E. J. Mass Spectrom. 1999, 34, 124.(25) Russell, D. H.; Barbacci, D. C.; Gimon-Kinsel, M. E. J. Mass Spectrom. 1999, 34, 124.
26. [26]
  (26) Yu, Z.; Cui, M.; Yan, C. Y.; Song, F. R.; Liu, Z. Q.; Liu, S. Y.Rapid Commun. Mass Spectrom. 2007, 21, 683.(26) Yu, Z.; Cui, M.; Yan, C. Y.; Song, F. R.; Liu, Z. Q.; Liu, S. Y.Rapid Commun. Mass Spectrom. 2007, 21, 683.
27. [27]
  (27) Schnier, P. D.; Price,W. D.; Jockusch, R. A.;Williams, E. R.J. Am. Chem. Soc. 1996, 118 (30), 7178. doi: 10.1021/ja9609157
  (27) Schnier, P. D.; Price,W. D.; Jockusch, R. A.;Williams, E. R.J. Am. Chem. Soc. 1996, 118 (30), 7178. doi: 10.1021/ja9609157

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沈阳化工大学材料科学与工程学院沈阳 110142

缓激肽多肽片段间非共价作用的质谱研究

English

Investigation of the Non-Covalent Interactions between Fragment Peptides of Bradykinin by Mass Spectrometry

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通讯作者: 陈斌, bchen63@163.com

中国化学会秘书处

缓激肽多肽片段间非共价作用的质谱研究

English

Investigation of the Non-Covalent Interactions between Fragment Peptides of Bradykinin by Mass Spectrometry

CCS Chemistry：嵌段共聚物自组装成 “三明治”二维有机材料，实现纳米级压力传感功能

CCS Chemistry：颜徐州、鲍哲南： 你的皮肤可能是一片SPMs

CCS Chemistry：工作高效不疲劳，只须让催化剂动起来

CCS Chemistry：静电组装导向聚合- 聚电解质纳米凝胶量化制备新策略

CCS Chemistry：金黄色葡萄球菌醛基脱氢酶是如何识别特异性底物的？

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