Citation: FANG Hong-Xia, ZHANG Qi, ZHANG Hui-Li, DU Yong, HONG Zhi. Terahertz Spectroscopic Analysis of Adenine and Fumaric Acid Cocrystals[J]. Acta Physico-Chimica Sinica, ;2015, 31(2): 221-226. doi: 10.3866/PKU.WHXB201412232 shu

Terahertz Spectroscopic Analysis of Adenine and Fumaric Acid Cocrystals

1.
Centre for Terahertz Research, China Jiliang University, Hangzhou 310018

Received Date: 5 November 2014
Available Online: 23 December 2014
Fund Project: 国家自然科学基金(21205110)资助项目 (21205110)

The absorption spectra of adenine, fumaric acid, and their cocrystal were measured using terahertz time-domain spectroscopy (THz-TDS) at room temperature. Experimental results show that they all have distinct fingerprint spectra in the terahertz region. The absorption peaks observed in the terahertz spectra of the cocrystal were at 0.92, 1.24, and 1.52 THz. These are very different from the corresponding reagents. Based on the characteristic hydrogen donor and/or acceptor behavior of adenine, density functional theory (DFT) was used to simulate three possible theoretical cocrystal structures with a focus on hydrogen bond formation between adenine and fumaric acid. The theoretical result shows that one of three possible simulated cocrystal structures had absorption peaks at 0.89, 1.16, and 1.41 THz, which is in agreement with the terahertz experimental result. Therefore, the structure of the cocrystal was confirmed wherein the first hydrogen bond is formed between the amino group of adenine and the hydroxyl group of fumaric acid. The second hydrogen bond is formed between the nitrogen atom of the nitrogen ring in adenine and the carbonyl group of fumaric acid. The characteristic absorption bands of the cocrystal between adenine and fumaric acid are also assigned based on the simulation results from the DFT calculation.
- Adenine,
- Fumaric acid,
- Cocrystal,
- Hydrogen bond,
- Terahertz time-domain spectroscopy,
- Density functional theory
1. [1]
  
  (1) Verma, R. P.; Hansch, C. J. Pharm. Sci. 2008, 97 (1), 88.
2. [2]
  (2) Ohara, K.; Smeitana, M.; Restouin, A.; Mollard, S.; Borg, J. P.; Collette, Y.; Vasseur, J. J. J. Med. Chem. 2007, 50 (26), 6465. doi: 10.1021/jm701207m
3. [3]
  (3) Song, Y. L.; Li, Y. L.;Wu, Z. Y. J. Inorg. Biochem. 2008, 102 (9), 1691. doi: 10.1016/j.jinorgbio.2008.04.005
4. [4]
  (4) Thompson, L. J.; Elias, N.; Male, L.; Tremayne, M. Cryst. Growth Des. 2013, 13 (4), 1464. doi: 10.1021/cg301561j
5. [5]
  (5) Byres, M.; Cox, P. J.; Kay, G.; Nixon, E. CrystEngComm 2009, 11 (1), 135. doi: 10.1039/b811243f
6. [6]
  (6) Perumalla, S. R.; Suresh, E.; Pedireddi, V. R. Angew. Chem. Int. Edit. 2005, 44 (47), 7752.
7. [7]
  (7) Du, L. C.; Zeng,W. L.; Liu, X. Y.; Jian, F. F. Acta Crystallogr., Sect. E: Struct. Rep. Online 2009, 65 (Suppl. 8), o1791.
8. [8]
  (8) Sridhar, B.; Ravikumar, K.; Varghese, B. Acta Crystallogr., Sect. C: Cryst. Struct. Commun. 2009, 65 (Suppl. 5), o202.
9. [9]
  (9) McHugh, C.; Erxleben, A. Cryst. Growth Des. 2011, 11 (11), 5096. doi: 10.1021/cg201007m
10. [10]
  (10) Hanus, M.; Kabelacek, M.; Rejnek, J.; Ryjacek, F.; Hobza, P. J. Phys. Chem. B 2004, 108 (6), 2087. doi: 10.1021/jp036090m
11. [11]
  (11) Lin, J.; Yu, C.; Peng, S.; Akiyama, I.; Li, K.; Lee, L. K.; LeBreton, P. R. J. Am. Chem. Soc. 1980, 102 (14), 4627. doi: 10.1021/ja00534a010
12. [12]
  (12) Dreyfus, M.; Dodin, G.; Bensaude, O.; Dubois, J. E. J. Am. Chem. Soc. 1975, 97 (9), 2369. doi: 10.1021/ja00842a011
13. [13]
  (13) Gu, J. D.; Leszczynski, J. J. Phys. Chem. A 1999, 103 (15), 2744. doi: 10.1021/jp982713y
14. [14]
  (14) Huang, Y. Q.; Kenttamaa, H. J. Phys. Chem. A 2004, 108 (20), 4485. doi: 10.1021/jp0312767
15. [15]
  (15) Xu, J. Z.; Zhang, X. C. Technology and Applications of Terahertz Wave; Peking University Press: Beijing, 2007; pp 1-5. [许景周, 张希成. 太赫兹波科学技术与应用. 北京: 北京大学出版社, 2007: 1-5]
16. [16]
  (16) Du, Y.; Xia, Y.; Zhang, H. L.; Hong, Z. Spectrochim. Acta A 2013, 111, 192. doi: 10.1016/j.saa.2013.03.081
17. [17]
  (17) Nguyen, K. L.; Friscic, T.; Day, G. M.; Gladden, L. F.; Jones,W. Nat. Mater. 2009, 6 (3), 206
18. [18]
  (18) Yang, C. X.;Wang, J.; Zhang, Z.W. Spectrosc. Spec. Anal. 2011, 31 (9), 2476. [杨彩霞, 王静, 张振伟. 光谱学与光谱分析, 2011, 31 (9), 2476.]
19. [19]
  (19) Frisch, M. J.; Trucks, G.W.; Schlegel, H. B.; et al. Gaussian 03, Revision E.01; Gaussian, Inc.:Wallingford, CT, 2004.
20. [20]
  (20) Axel, D. B. J. Chem. Phys. 1993, 98, 5648.
21. [21]
  (21) Scoot, P.; Radom, L. J. Chem. Phys. 1996, 100, 16502.
22. [22]
  (22) Zhao, R. J.; He, J. L.; Li, J.; Guo, C. S.; Du, Y.; Hong, Z. Acta Phys. -Chim. Sin. 2011, 27 (12), 2743. [赵容娇, 何金龙, 李璟, 郭昌盛, 杜勇, 洪治. 物理化学学报, 2011, 27 (12), 2743.] doi: 10.3866/PKU.WHXB20112743
23. [23]
  (23) Gao, Y.; Zhu, H.; Zhang, J. J. Prog. Chem. 2010, 22 (5), 829. [高缘, 祖卉, 张建军. 化学进展, 2010, 22 (5), 829.]
24. [24]
  (24) Brown, C. J. Acta Crystallogr. 1966, 21, 1.
25. [25]
  (25) Yu, B.; Zeng, F.; Yang, Y.; Xing, Q.; Chechin, A.; Xin, X.; Zeylikovich, I.; Alfano, R. R. Biophys. J. 2004, 86, 1649.
26. [26]
  (26) Perumalla, S. R.; Suresh, E ; Pedireddi, V. R. Angew. Chem. Int. Edit. 2005, 44, 7752.
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