Citation:
	            
		            FAN  Xiao-Li, RAN  Run-Xin, ZHANG  Chao, YANG  Yong-Liang. Density Functional Theory Study on the Adsorption of Dodecylthiol on Au(111) Surface[J]. Acta Physico-Chimica Sinica,
							;2013, 29(09): 1907-1915.
						
							doi:
								10.3866/PKU.WHXB201307022
						
					
				
					
				
	        
- 
	                	
By applying the first-principles methods based on density functional theory and the slab model, we have studied the non-dissociative and dissociated adsorptions of a dodecylthiol (C12H25SH) molecule on Au(111) surface. Based on the calculated results, the fate of the H atom has been analyzed, and the longchain adsorption and short-chain adsorption have been compared. We have performed structure optimizations for a series of initial structures with the S atom located on different sites with different tilt angles. This structure optimizations gave two surface structures before and after the dissociation of S―H; the standing-up and lying-down adsorption structures. Our calculations indicate that the C12H25SH molecule prefers to stay on the top site, the corresponding adsorption energies are 0.35-0.38 eV. The dissociated C12H25S group prefers to adsorb on the bri-fcc site, with adsorption energies of 2.01-2.09 eV. We have compared the non-dissociative C12H25SH/Au(111) and dissociated C12H25S/Au(111) with the H atom adsorbing onto Au and desorbing as H2, and found that the non-dissociative adsorption is more stable. The formation energy and the electronic structure showed that the non-dissociative adsorption belongs to the weak chemisorption, whereas the interaction between the S atom and Au surface becomes much stronger following cleavage of the S―H. A comparison of the adsorption of long-chain thiols on Au(111) surface with that of the short-chain thiols, indicates that the adsorption energies of the long-chain thiols are slightly larger, and the distances between the S atomand the surface Au atoms are slightly shorter.
 - 
	                	
	                 - 
	                	
- 
			
                    [1]
                
			
(1) Ulman, A. Chem. Rev. 1996, 96, 1533. doi: 10.1021/cr9502357
 - 
			
                    [2]
                
			
(2) Schreiber, F. Prog. Surf. Sci. 2000, 65, 151. doi: 10.1016/S0079-6816(00)00024-1
 - 
			
                    [3]
                
			
(3) Schreiber, F. J. Phys.: Condes. Matter 2004, 16, R881.
 - 
			
                    [4]
                
			
(4) Love, J. C.; Estroff, L. A.; Kriebel, J. K.; Nuzzo, R. G.;Whitesides, G. M. Chem. Rev. 2005, 105, 1103. doi: 10.1021/cr0300789
 - 
			
                    [5]
                
			
(5) Nenchev, G.; Diaconescu, B.; Hagelberg, F.; Pohl, K. Phys. Rev. B 2009, 80, 081401. doi: 10.1103/PhysRevB.80.081401
 - 
			
                    [6]
                
			
(6) Chen, W. K.; Cao, M. J.; Liu, S. H.; Xu, Y.; Li, Y.; Li, J. Q. Acta Phys. -Chim. Sin. 2005, 21, 903. [陈文凯, 曹梅娟, 刘书红,许莹,李奕,李俊篯. 物理化学学报, 2005, 21, 903.] doi: 10.3866/PKU.WHXB20050816
 - 
			
                    [7]
                
			
(7) Cao, M. J.; Chen, W. K.; Liu, S. H.; Lu, C. H.; Xu, Y.; Li, J. Q.Chin. J. Catal. 2006, 27, 223. [曹梅娟, 陈文凯,刘书红, 陆春海,许莹,李俊篯.催化学报, 2006, 27, 223.]
 - 
			
                    [8]
                
			
(8) Cao, M. J.; Chen, W. K.; Liu, S. H.; Xu, Y.; Li, J. Q. Acta Phys. -Chim. Sin. 2006, 22, 11. [曹梅娟, 陈文凯,刘书红,许莹,李俊篯. 物理化学学报, 2006, 22, 11.] doi: 10.3866/PKU.WHXB20060103
 - 
			
                    [9]
                
			
(9) Li, B.; Zeng, C. G.; Li, Q. X.; Yang, J. L.; Hou, J. G.; Zhu, Q. S.J. Chin. Electr. Microsc. Soc. 2003, 22, 189. [李斌,曾长淦,李群祥, 杨金龙, 侯建国, 朱清时. 电子显微学报, 2003, 22,189.]
 - 
			
                    [10]
                
			
(10) Yourdshahyan, Y.; Zhang, H. K.; Rappe, A. M. Phys. Rev. B2001, 63, 081405. doi: 10.1103/PhysRevB.63.081405
 - 
			
                    [11]
                
			
(11) Vericat, C.; Vela, M. E.; Salvarezza, R. C. Phys. Chem. Chem. Phys. 2005, 7, 3258. doi: 10.1039/b505903h
 - 
			
                    [12]
                
			
(12) Maksymovych, P.; Yates, J. T. J. Am. Chem. Soc. 2006, 128,10642. doi: 10.1021/ja062006f
 - 
			
                    [13]
                
			
(13) Maksymovych, P.; Sorescu, D. C.; Yates, J. T. J. Phys. Chem. B2006, 110, 21161. doi: 10.1021/jp0625964
 - 
			
                    [14]
                
			
(14) Maksymovych, P.; Vocnyy, O.; Dougherty, D. B.; Sorescu, D. C.;Yates, J. T. Pro. Surf. Sci. 2010, 85, 206. doi: 10.1016/j.progsurf.2010.05.001
 - 
			
                    [15]
                
			
(15) Vericat, C.; Vela, M. E.; Benitez, G.; Carro, P.; Salvarezza, R. C.Chem. Soc. Rev. 2010, 39, 1805. doi: 10.1039/b907301a
 - 
			
                    [16]
                
			
(16) Min, J. X.; Fan, X. L.; Cheng, Q. Z.; Chi, Q. Acta Chim. Sin.2011, 69, 789. [闵家祥, 范晓丽,程千忠,池琼.化学学报,2011, 69, 789.]
 - 
			
                    [17]
                
			
(17) Carro, P.; Torres, D.; Diaz, R.; Salvarezza, R. C.; Lllas, F.J. Phys. Chem. Lett. 2012, 3, 2159. doi: 10.1021/jz300712g
 - 
			
                    [18]
                
			
(18) Li, B.; Zeng, C. G.; Li, Q. X.; Wang, B.; Yuan, L. F.; Wang, H.Q.; Yang, J. L.; Hou, J. G.; Zhu, Q. S. J. Phys. Chem. B 2003,107, 972. doi: 10.1021/jp0261861
 - 
			
                    [19]
                
			
(19) Wang, J. G.; Selloni, A. J. Phys. Chem. C 2007, 111, 12149. doi: 10.1021/jp0745891
 - 
			
                    [20]
                
			
(20) Nakayz, M.; Shikishima, M.; Shibuta, M.; Hirata, N.; Eguchi,T.; Nakajima, A. ACS Nano 2012, 6, 8728. doi: 10.1021/nn302405r
 - 
			
                    [21]
                
			
(21) Hohenberg, P.; Kohn, W. Phys. Rev. 1964, 136, B864.
 - 
			
                    [22]
                
			
(22) Kohn, W.; Sham, L. J. Phys. Rev. 1965, 140, A1133.
 - 
			
                    [23]
                
			
(23) Kresse, G.; Hafner, J. Phys. Rev. B 1993, 47, 558. doi: 10.1103/PhysRevB.47.558
 - 
			
                    [24]
                
			
(24) Kresse, G.; Hafner, J. Phys. Rev. B 1994, 49, 14251. doi: 10.1103/PhysRevB.49.14251
 - 
			
                    [25]
                
			
(25) Kresse, G.; Furthmüller, J. Phys. Rev. B 1996, 54, 11169.doi: 10.1103/PhysRevB.54.11169
 - 
			
                    [26]
                
			
(26) Kresse, G.; Furthmüller, J. Comput. Mater. Sci. 1996, 6, 15.doi: 10.1016/0927-0256(96)00008-0
 - 
			
                    [27]
                
			
(27) Kresse, G.; Joubert, D. Phys. Rev. B 1999, 59, 1758. doi: 10.1103/PhysRevB.59.1758
 - 
			
                    [28]
                
			
(28) Blochl, P. E. Phys. Rev. B 1994, 50, 17953. doi: 10.1103/PhysRevB.50.17953
 - 
			
                    [29]
                
			
(29) Perdew, J. P.; Burke, K.; Ernzerhof, M. Phys. Rev. Lett. 1996,77, 3865. doi: 10.1103/PhysRevLett.77.3865
 - 
			
                    [30]
                
			
(30) Nara, J.; Higai, S.; Morikawa, Y.; Ohno, T. J. Chem. Phys. 2004,120, 6705. doi: 10.1063/1.1651064
 - 
			
                    [31]
                
			
(31) Fan, X. L.; Chi, Q.; Liu, C.; Lau, W. J. Phys. Chem. C 2012,116, 1001.
 - 
			
                    [32]
                
			
(32) Lustemberg, P. G.; Martiarena, M. L.; Martínez, A. E.;Busnen , H. F. Langmuir 2008, 24, 3274. doi: 10.1021/la703306t
 - 
			
                    [33]
                
			
(33) Fan, X. L.; Zhang, C.; Liu, Y.; Lau, W. M. J. Phys. Chem. C2012, 116, 19909. doi: 10.1021/jp306812v
 - 
			
                    [34]
                
			
(34) Maksymovych, P.; Yates, J. T. J. Am. Chem. Soc. 2008, 130,7518. doi: 10.1021/ja800577w
 - 
			
                    [35]
                
			
(35) Rajaraman, G.; Caneschi, A.; Gatteschi, D.; Totti, F. Phys. Chem. Chem. Phys. 2011, 13, 3886. doi: 10.1039/c0cp02042g
 - 
			
                    [36]
                
			
(36) Tielens, F.; Santos, E. J. Phys. Chem. C 2010, 114, 9444.
 - 
			
                    [37]
                
			
(37) ttschalck, J.; Hammer, B. J. Chem. Phys. 2002, 116, 784.
 - 
			
                    [38]
                
			
(38) Henkelman, G.; Arnaldsson, A.; Jonsson, H. Comput. Mater. Sci. 2006, 36, 354. doi: 10.1016/j.commatsci.2005.04.010
 
 - 
			
                    [1]
                
			
 - 
	                	
						
						
						
						
	                 - 
	                	
- 
				[1]
				
Hao XU , Ruopeng LI , Peixia YANG , Anmin LIU , Jie BAI . Regulation mechanism of halogen axial coordination atoms on the oxygen reduction activity of Fe-N4 site: A density functional theory study. Chinese Journal of Inorganic Chemistry, 2025, 41(4): 695-701. doi: 10.11862/CJIC.20240302
 - 
				[2]
				
Jie ZHAO , Sen LIU , Qikang YIN , Xiaoqing LU , Zhaojie WANG . Theoretical calculation of selective adsorption and separation of CO2 by alkali metal modified naphthalene/naphthalenediyne. Chinese Journal of Inorganic Chemistry, 2024, 40(3): 515-522. doi: 10.11862/CJIC.20230385
 - 
				[3]
				
Meifeng Zhu , Jin Cheng , Kai Huang , Cheng Lian , Shouhong Xu , Honglai Liu . Classical Density Functional Theory for Understanding Electrochemical Interface. University Chemistry, 2025, 40(3): 148-152. doi: 10.12461/PKU.DXHX202405166
 - 
				[4]
				
Xinwan Zhao , Yue Cao , Minjun Lei , Zhiliang Jin , Tsubaki Noritatsu . Constructing S-scheme heterojunctions by integrating covalent organic frameworks with transition metal sulfides for efficient noble-metal-free photocatalytic hydrogen evolution. Acta Physico-Chimica Sinica, 2025, 41(12): 100152-0. doi: 10.1016/j.actphy.2025.100152
 - 
				[5]
				
Kaifu Zhang , Shan Gao , Bin Yang . Application of Theoretical Calculation with Fun Practice in Raman Spectroscopy Experimental Teaching. University Chemistry, 2025, 40(3): 62-67. doi: 10.12461/PKU.DXHX202404045
 - 
				[6]
				
Jie ZHAO , Huili ZHANG , Xiaoqing LU , Zhaojie WANG . Theoretical calculations of CO2 capture and separation by functional groups modified 2D covalent organic framework. Chinese Journal of Inorganic Chemistry, 2025, 41(2): 275-283. doi: 10.11862/CJIC.20240213
 - 
				[7]
				
Yupeng TANG , Haiying YANG , Fan JIN , Nan LI . Hydrogen storage properties of C6S6Li6: A density functional theory study. Chinese Journal of Inorganic Chemistry, 2025, 41(9): 1827-1839. doi: 10.11862/CJIC.20240460
 - 
				[8]
				
Xinyu Miao , Hao Yang , Jie He , Jing Wang , Zhiliang Jin . Adjusting the electronic structure of Keggin-type polyoxometalates to construct S-scheme heterojunction for photocatalytic hydrogen evolution. Acta Physico-Chimica Sinica, 2025, 41(6): 100051-0. doi: 10.1016/j.actphy.2025.100051
 - 
				[9]
				
Linfeng Xiao , Wanlu Ren , Shishi Shen , Mengshan Chen , Runhua Liao , Yingtang Zhou , Xibao Li . Enhancing Photocatalytic Hydrogen Evolution through Electronic Structure and Wettability Adjustment of ZnIn2S4/Bi2O3 S-Scheme Heterojunction. Acta Physico-Chimica Sinica, 2024, 40(8): 2308036-0. doi: 10.3866/PKU.WHXB202308036
 - 
				[10]
				
Ximeng CHI , Jianwei WEI , Yunyun WANG , Wenxin DENG , Jiayi DAI , Xu ZHOU . First-principles study of the electronic structure and optical properties of Au and I doped-inorganic lead-free double perovskite Cs2NaBiCl6. Chinese Journal of Inorganic Chemistry, 2025, 41(7): 1371-1379. doi: 10.11862/CJIC.20240401
 - 
				[11]
				
Maitri Bhattacharjee , Rekha Boruah Smriti , R. N. Dutta Purkayastha , Waldemar Maniukiewicz , Shubhamoy Chowdhury , Debasish Maiti , Tamanna Akhtar . Synthesis, structural characterization, bio-activity, and density functional theory calculation on Cu(Ⅱ) complexes with hydrazone-based Schiff base ligands. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1409-1422. doi: 10.11862/CJIC.20240007
 - 
				[12]
				
Weina Wang , Lixia Feng , Fengyi Liu , Wenliang Wang . Computational Chemistry Experiments in Facilitating the Study of Organic Reaction Mechanism: A Case Study of Electrophilic Addition of HCl to Asymmetric Alkenes. University Chemistry, 2025, 40(3): 206-214. doi: 10.12461/PKU.DXHX202407022
 - 
				[13]
				
Zhengkun QIN , Zicong PAN , Hui TIAN , Wanyi ZHANG , Mingxing SONG . A series of iridium(Ⅲ) complexes with fluorophenyl isoquinoline ligand and low-efficiency roll-off properties: A density functional theory study. Chinese Journal of Inorganic Chemistry, 2025, 41(6): 1235-1244. doi: 10.11862/CJIC.20240429
 - 
				[14]
				
Tongqi Ye , Yanqing Wang , Qi Wang , Huaiping Cong , Xianghua Kong , Yuewen Ye . Reform of Classical Thermodynamics Curriculum from the Perspective of Computational Chemistry. University Chemistry, 2025, 40(7): 387-392. doi: 10.12461/PKU.DXHX202409128
 - 
				[15]
				
Wei Sun , Yongjing Wang , Kun Xiang , Saishuai Bai , Haitao Wang , Jing Zou , Arramel , Jizhou Jiang . CoP Decorated on Ti3C2Tx MXene Nanocomposites as Robust Electrocatalyst for Hydrogen Evolution Reaction. Acta Physico-Chimica Sinica, 2024, 40(8): 2308015-0. doi: 10.3866/PKU.WHXB202308015
 - 
				[16]
				
Xiaochen Zhang , Fei Yu , Jie Ma . Cutting-Edge Applications of Multi-Angle Numerical Simulations for Capacitive Deionization. Acta Physico-Chimica Sinica, 2024, 40(11): 2311026-0. doi: 10.3866/PKU.WHXB202311026
 - 
				[17]
				
Jiali CHEN , Guoxiang ZHAO , Yayu YAN , Wanting XIA , Qiaohong LI , Jian ZHANG . Machine learning exploring the adsorption of electronic gases on zeolite molecular sieves. Chinese Journal of Inorganic Chemistry, 2025, 41(1): 155-164. doi: 10.11862/CJIC.20240408
 - 
				[18]
				
Jiahong ZHENG , Jingyun YANG . Preparation and electrochemical properties of hollow dodecahedral CoNi2S4 supported by MnO2 nanowires. Chinese Journal of Inorganic Chemistry, 2024, 40(10): 1881-1891. doi: 10.11862/CJIC.20240170
 - 
				[19]
				
Jingwen Wang , Minghao Wu , Xing Zuo , Yaofeng Yuan , Yahao Wang , Xiaoshun Zhou , Jianfeng Yan . Advances in the Application of Electrochemical Regulation in Investigating the Electron Transport Properties of Single-Molecule Junctions. University Chemistry, 2025, 40(3): 291-301. doi: 10.12461/PKU.DXHX202406023
 - 
				[20]
				
Xiaohang JIN , Qi LIU , Jianping LANG . Room‑temperature solid‑state synthesis, structure, and third‑order nonlinear optical properties of phosphine‑ligand‑protected silver thiolate clusters. Chinese Journal of Inorganic Chemistry, 2025, 41(8): 1505-1512. doi: 10.11862/CJIC.20250125
 
 - 
				[1]
				
 
Metrics
- PDF Downloads(743)
 - Abstract views(1366)
 - HTML views(28)
 
 
Login In
	                    
	                    
	                    
	                    
DownLoad: