Citation: LIU Wen-Hu, YUAN Jiang-Bei, CHANG Jin-Xia. Label-free Quantitative Proteomics for Investigation of Signaling Pathways of GATA6 Regulating Trastuzumab Resistance in Gastric Cancer Cells[J]. Chinese Journal of Analytical Chemistry, ;2020, 48(2): 187-196. doi: 10.19756/j.issn.0253-3820.191612 shu

Label-free Quantitative Proteomics for Investigation of Signaling Pathways of GATA6 Regulating Trastuzumab Resistance in Gastric Cancer Cells

1.
Research Center of Molecular Metabolomics, Xiangya Hospital Central South University, Changsha 410008, China;
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Department of Pharmacy, North Sichuan Medical College, Nanchong 637100, China;
3.
School of Basic Medical Sciences, North Sichuan Medical College, Nanchong 637100, China;
4.
School of Pharmaceutical Sciences and Innovative Drug Research Center, Chongqing University, Chongqing 401331, China

Received Date: 17 October 2019
Revised Date: 7 November 2019

Fund Project: This work was supported by the Applied Basic Research Program of Science and Technology of Sichuan Province, China (No. 2019YJ0378), the Project of Sichuan Province Education Department (No. 17ZB0170), the Doctoral Program of North Sichuan Medical College (No. CBY17-QD05), and the Program of Science and Technology of Nanchong, China (No. 18SXHZ0402).

Trastuzumab resistance is one of the principal causes of failure in tumor chemotherapy. Previous studies show that the DNA-binding activity of GATA6, a transcription factor, has a remarkable enhancement in trastuzumab resistant gastric cancer cells (NCI N87/R), while its correlation to resistance remains unclear. In this study, Crispr/Cas9 was employed to establish a GATA6 knock-out cell line (NCI N87R/GATA6). The signaling pathways regulated by GATA6 and related to trastuzumab resistance were investigated based on label-free quantitative proteomics combined with bioinformatics. The extracted proteins were alkylated, and digested using filter aided sample preparation (FASP), and the peptides were separated via high performance liquid chromatography and thereafter quantified by LC-MS/MS. Differentially expressed proteins were screened by fold change and student's t-test between NCI N87/R and NCI N87R/GATA6 cells. WebGestalt website was adopted for Gene ontology analysis, and GeneAnalytics was utilized for pathway enrichment analysis. The results demonstrated that GATA6 knock-out enhanced the antiproliferative effect of trastuzumab on NCI N87/R cells and suppressed their invasion ability. A total of 5792 proteins were quantified by LC-MS/MS, among which 305 proteins were up-regulated in NCI N87R/GATA6 cells while 182 ones down-regulated. Pathway enrichment analysis revealed that mitochondrial transport, apoptosis, DNA damage, glucose metabolism, pyruvate metabolism and TCA cycle and Wnt/β-catenin degradation pathways exhibited significant changes. Western blot manifested that the expression of mitochondrial dyneins OPA1 and DNM1L, apoptosis protein caspase-9, TCA metabolic enzymes SUCLG2 and MDH1, and glycogen metabolic enzyme PYGL changed significantly in NCI N87R/GATA6 cells, manifesting that GATA6 knock-out gave rise to mitochondrial dysfunction and abnormal energy metabolism, and therefore inducing the apoptosis of NCI N87R/GATA6 cells. The result implicated that inhibiting the transcriptional activity of GATA6 could be an effective strategy to reverse trastuzumab resistance in gastric cancer.
- Trastuzumab,
- Resistance,
- Label-free quantitative proteomics,
- Transcription factor GATA-6,
- Signaling pathway
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