Study of the Binding Mode of Quaternary Ammonium Cationic Surfactant to Firefly Luciferase and the Prediction of Binary Mixture Toxicity
- Corresponding author: Li-Tang QIN, qinsar@163.com Jun-Feng DAI,
Citation: Ling-Yun MO, Wen MA, Song KONG, Li-Tang QIN, Yan-Peng LIANG, Jun-Feng DAI, Shu-Shen LIU. Study of the Binding Mode of Quaternary Ammonium Cationic Surfactant to Firefly Luciferase and the Prediction of Binary Mixture Toxicity[J]. Chinese Journal of Structural Chemistry, ;2020, 39(6): 1167-1177. doi: 10.14102/j.cnki.0254-5861.2011-2543
Tezel, U. Fate and Effect of Quaternary Ammonium Compounds in Biological Systems. Doctoral Thesis, Georgia Institute of Technology 2009, p1−6.
Doherty, A. C. The Distribution, Fate and Application as Tracers of Quaternary Ammonium Compounds (QACs) in Sewage Impacted Estuaries. Doctoral Thesis, State University of New York at Stony Brook 2013, p2−7.
Kreuzinger, N.; Fuerhacker, M.; Scharf, S.; Uhl, M.; Gans, O.; Grillitsch, B. Methodological approach towards the environmental significance of uncharacterized substances: quaternary ammonium compounds as an example. Desalination 2007, 1−3, 209−222.
Lara-Martin, P. A.; Li, X. L.; Bopp, R. F.; Brownawell, B. J. Occurrence of alkyltrimethylammonium compounds in urban estuarine sediments: behentrimonium as a new emerging contaminant. Environ. Sci. Technol. 2010, 19, 7569−7575.
Ruan, T.; Song, S.; Wang, T.; Liu, R.; Lin, Y.; Jiang, G. Identification and composition of emerging quaternary ammonium compounds in municipal aewage sludge in China. Environ. Sci. Technol. 2014, 48, 4289−4297.
doi: 10.1021/es4050314
Liu, N.; Zhang, H.; Zhao, J. F.; Xu, Y.; Ge, F. Mechanisms of cetyltrimethyl ammonium chloride-induced toxicity to photosystem Ⅱ oxygen evolution complex of Chlorella vulgaris F1068. J. Hazard. Mater. 2020, 383, 121063−10.
doi: 10.1016/j.jhazmat.2019.121063
Van de Voorde, A.; Lorgeoux, C.; Gromaire, M. C.; Chebbo, G. Analysis of quaternary ammonium compounds in urban stormwater samples. Environ. Pollut. 2012, 164, 150−157.
doi: 10.1016/j.envpol.2012.01.037
Bassarab, P.; Williams, D.; Dean, J. R.; Ludkin, E.; Perry, J. J. Determination of quaternary ammonium compounds in seawater samples by solid-phase extraction and liquid chromatography-mass spectrometry. J. Chromatogr. A 2011, 5, 673−677.
Wei, R. C.; Li, G. F.; Gao, R.; Sun, T.; Gong, L.; Chen, M.; Wang, R. Simultaneous determination of residues of various quaternary ammonium compounds in milk by solid phase extraction-high performance liquid chromatography-tandem mass spectrometry. Chin. J. Anal. Chem. 2014, 5, 711−716.
Dumitrescu, G.; Ciochina, L. P.; Stana, L.; Cretescu, I.; Popescu, R.; Filimon, N. M.; Voia, O. S. Acute effects of tetrabutylammonium chloride ionic liquid on the histological structure of liver and kidney in the mouse. Rom. Biotech. Lett. 2014, 1, 8925−8934.
Shi, J. W.; Yang, J. Q.; Li, Q. Q. Determination of multiple quaternary ammonium compounds in cosmetics by solid phase extraction - gas chromatography/mass spectrometry. Flav. Fragr. Cosm. 2019, 2, 48−52.
Zheng, M. J.; Xiang, L.; Li, Y. W.; Mo, C. H.; Cai, Q. Y.; Huang, X. P.; Wu, X. L.; Zhao, H. M. Simultaneous determination of three quaternary ammonium salt compounds in water by liquid-liquid extraction-gas chromatography/mass spectrometry. Chin. J. Anal. Chem. 2014, 5, 735−740.
Pawlowka, B.; Biczak, R. Evaluation of the effect of tetraethylammonium bromide and chloride on the growth and development of terrestrial plants. Chemosphere 2016, 149, 24−33.
doi: 10.1016/j.chemosphere.2016.01.072
Kim, J.; Kim, S. State of the art in the application of QSAR techniques for predicting mixture toxicity in environmental risk assessment. SAR. QSAR. Environ. Res. 2015, 26, 41−59.
doi: 10.1080/1062936X.2014.984627
Qin, L. T.; Zhang, X.; Mo, L. Y.; Liang, Y. P.; Zeng, H. H. Further exploring linear concentration addition and independent action for predicting non-interactive mixture toxicity. Chin. J. Struct. Chem. 2017, 6, 886−896.
Qin, L. T.; Chen, Y. H.; Zhang, X.; Mo, L. Y.; Zeng, H. H.; Liang, Y. P. QSAR prediction of additive and non-additive mixture toxicities of antibiotics and pesticide. Chemosphere 2018, 298, 122−129.
Zhang, S. N.; Su, L. M.; Zhang, X. J.; Chao, L.; Qin, W. C.; Zhang, D. M.; Liang, X. X.; Zhao, Y. H. Combined toxicity of nitro-substituted benzenes and zinc to photobacterium phosphoreum: evaluation and QSAR analysis. Int. J. Environ. Res. Public Health 2019, 16, 1041−1052.
doi: 10.3390/ijerph16061041
Qu, R. J.; Liu, H. X.; Feng, M. B.; Yang, X.; Wang, Z. Y. Investigation on intramolecular hydrogen bond and some thermodynamic properties of polyhydroxylated anthraquinones. J. Chem. Eng. Data 2012, 57, 2442−2455.
doi: 10.1021/je300407g
Liu, H. X.; Shi, J. Q.; Liu, H.; Wang, Z. Y. Improved 3D-QSPR analysis of the predictive octanoleair partition coefficients of hydroxylated and methoxylated polybrominated diphenyl ethers. Atmos. Environ. 2013, 77, 840−845.
doi: 10.1016/j.atmosenv.2013.05.068
Loewe, S. Effect of combinations: mathematical basis of problem. Arch. Exp. Pathol. Pharmakol. 1926, 313−326.
BLISS, C. I. The toxicity of poisons applied jointly. Ann. Appl. Biol. 1939, 3, 585−615.
Saha, S.; Islam, M. K.; Shilpi, J. A.; Hasan, S. Inhibition of VEGF: a novel mechanism to control angiogenesis by Withania somnifera's key metabolite Withaferin A. In Silico Pharmacol 2013, 1−11.
Aguayo-Ortiz, R.; Mendez-Lucio, O.; Medina-Franco, J. L.; Castillo, R.; Yepez-Mulia, L.; Hernandez-Luis, F.; Hernandez-Campos. Towards the identification of the binding site of benzimidazoles to β-tubulin of trichinella spiralis: insights from computational and experimental data. J. Mol. Graph. Model 2013, 41, 12−19.
doi: 10.1016/j.jmgm.2013.01.007
Khan, M. S.; Baig, M. H.; Ahmad, S.; Siddiqui, S. A.; Srivastava, A. K.; Srinivasan, K. V.; Ansari, I. A. Design, synthesis, evaluation and thermodynamics of 1-substituted pyridylimidazo[1, 5-a]pyridine derivatives as cysteine protease inhibitors. Plos One 2013, 8, e69982−8.
doi: 10.1371/journal.pone.0069982
Koca, M.; Yerdelen, K. O.; Anil, B.; Kasap, Z. Microwave-assisted synthesis, molecular docking, and cholinesterase inhibitory activities of new ethanediamide and 2-butenediamide analogues. Chem. Pharm. Bull. 2015, 3, 210−217.
Tong, J. B.; Wang, Y.; Lei, S.; Qin, S. S. Comprehensive 3D-QSAR and binding mode of DAPY inhibitors using R-group search and molecular docking. Chin. J. Struct. Chem. 2019, 1, 25−36.
Huang, C. S.; Tu, W. T.; Luo, M.; Shi, J. C. Molecular docking and design of novel heterodimers of donepezil and huperzine fragments as acetylcholinesterase inhibitors. Chin. J. Struc. Chem. 2016, 6, 839−848.
Li, F.; Xie, Q.; Li, X.; Li, N.; Chen, J.; Wang, Z.; Hao, C. Hormone activity of hydroxylated polybrominated diphenyl ethers on human thyroid receptor-beta: in vitro and in silico investigations. Environ. Health Perspect. 2010, 5, 602−606.
Liu, B. G.; Xiao, H. Z.; Li, J. Q.; Geng, S.; Ma, H. J.; Liang, G. Z. Interaction of phenolic acids with trypsin: experimental and molecular modeling studies. Food Chem. 2017, 228, 1−6.
doi: 10.1016/j.foodchem.2017.01.126
Mohammadzadeh-Aqhdash, H.; Dolatabadi, J. E. N.; Dehqhan, P.; Panahi-Azar, V.; Barzeqar, A. Multi-spectroscopic and molecular modeling studies of bovine serum albumin interaction with sodium acetate food additive. Food Chem. 2017, 228, 265−269.
doi: 10.1016/j.foodchem.2017.01.149
Ren, G. Y.; Sun, H.; Li, G.; Fan, J. L.; Wu, Y.; Cui, G. T. Molecular docking and muiltple spectroscopy investigation on the binding characteristics of aloe-emodin to pepsin. J. Mol. Struct. 2019, 1195, 369−377.
doi: 10.1016/j.molstruc.2019.05.084
Yu, Q.; Fan, L. P.; Duan, Z. H. Five individual polyphenols as tyrosinase inhibitors: inhibitory activity, synergistic effect, action mechanism, and molecular docking. Food Chem. 2019, 297, 124910-10.
doi: 10.1016/j.foodchem.2019.05.184
Yu, Q.; Fan, L. P.; Duan, Z. H. Five individual polyphenols as tyrosinase inhibitors: inhibitory activity, synergistic effect, action mechanism, and molecular docking. Food Chem. 2019, 297, 124910−10. (33) Jin, K. L.; Ye, J. M.; Lin, K. Observation on the effect of ATP bio-fluorescence method on hand hygiene test of medical staff. Zhejiang Med. Educ. 2015, 11, 991−992.
Bugno, A.; Almodovar, A. A. B.; Saes, D. P. S.; Awasthi, R.; Ghisleni, D. D.; Braga, M. D.; de Oliveira, W. A.; Dua, K.; Pinto, T. D. A. Evaluation of an amplified ATP bioluminescence method for rapid sterility testing of large volume parenteral. J. Pharm. Innov. 2019, 2, 152−158.
Zhang, Z. J.; Wang, C. X.; Zhang, L. R.; Meng, Q. T.; Zhang, Y. M.; Sun, F.; Xu, Y. D. Fast detection of Escherichia coli in food using nanoprobe and ATP bioluminescence technology. Anal. Methods 2017, 36, 5378−5387.
Liu, J. W.; Sun, C. H.; Liu, N. Luciferase and its application. Bull. Biol. 2004, 2, 15−17.
Yao, B.; Chai, C. Y.; Liu, H. F.; Liu, X. F.; Li, F.; Liu, G. Y. Testing the comprehensive toxicity of pesticides in drinking water based on luciferase luminescence system. Adm. Techn. Environ. 2010, 1, 37−40.
Weng, Z. Y.; Zhang, H. C.; Yao, B.; Shang, J.; Wang, Y. R.; Chai, C. Y.; Liu, G. Y. Comprehensive toxicity evaluation of several industrial pollutants based on luciferase luminescence detection system. Chin. J. Environ. Engin. 2012, 6, 2109−2112.
Chen, F.; Liu, S. S.; Duan, X. T.; Xiao, Q. F. Predicting the mixture effects of three pesticides by integrating molecular simulation with concentration addition modeling. RSC Adv. 2014, 61, 32256−32262.
Ge, H. L.; Liu, S. S.; Zhu, X. W.; Liu, H. L.; Wang, L. J. Predicting hormetic effects of ionic liquid mixtures on luciferase activity using the concentration addition model. Environ. Sci. Technol. 2011, 4, 1623−9.
Dou, R. N.; Liu, S. S.; Mo, L. Y.; Liu, H. L.; Deng, F. C. A novel direct equipartition ray design (EquRay) procedure for toxicity interaction between ionic liquid and dichlorvos. Environ. Sci. Pollut. Res. 2011, 5, 734−42.
Zhu, X. W.; Liu, S. S.; Qin, L. T.; Chen, F.; Liu, H. L. Modeling non-monotonic dose-response relationships: model evaluation and hormetic quantities exploration. Ecotox. Environ. Safe. 2013, 89, 130−136.
Zhu, X. W.; Liu, S. S.; Ge, H. L.; Liu, Y. Comparison of two confidence intervals for dose-effect relationship. Chin. Environ. Sci. 2009, 2, 113−117.
Altenburger, R.; Walter, H.; Grote, M. What contributes to the combined effect of a complex mixture? Environ. Sci. Technol. 2004, 23, 6353−62.
Sundlow, J. A.; Fontaine, D. M.; Southworth, T. L.; Branchini, B. R.; Gulick, A. M. Crystal structure of firefly luciferase in a second catalytic conformation supports a domain alternation mechanism. Biochemistry 2012, 33, 6493−6495.
Discovery Studio, version 2.5. Accelrys Inc. : San Diego, CA, USA 2009.
Noori, A. R.; Hosseinkhani, S.; Ghiasi, P.; Heydari, A.; Akbari, J. Water-miscible ionic liquids as novel effectors for the firefly luciferase reaction. Eng. Life Sci. 2013, 2, 201−209.
Bedford, R.; LePage, D.; Hoffmann, R.; Kennedy, S.; Gutschenritter, T.; Bull, L.; Sujijantarat, N.; DiCesare, J. C.; Sheaff, R. J. Luciferase inhibition by a novel naphthoquinone. J. Photochem. Photobiol. B, Biol. 2012, 107, 55−64.
Berovic, N.; Parker, D. J.; Smith, M. D. An investigation of the reaction kinetics of luciferase and the effect of ionizing radiation on the reaction rate. Eur. Biophys. J. Biophys. Lett. 2009, 4, 42
Xinyu You , Xin Zhang , Shican Jiang , Yiru Ye , Lin Gu , Hexun Zhou , Pandong Ma , Jamal Ftouni , Abhishek Dutta Chowdhury . Efficacy of Ca/ZSM-5 zeolites derived from precipitated calcium carbonate in the methanol-to-olefin process. Chinese Journal of Structural Chemistry, 2024, 43(4): 100265-100265. doi: 10.1016/j.cjsc.2024.100265
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Ming ZHENG , Yixiao ZHANG , Jian YANG , Pengfei GUAN , Xiudong LI . Energy storage and photoluminescence properties of Sm3+-doped Ba0.85Ca0.15Ti0.90Zr0.10O3 lead-free multifunctional ferroelectric ceramics. Chinese Journal of Inorganic Chemistry, 2024, 40(4): 686-692. doi: 10.11862/CJIC.20230388
Fang-Yuan Chen , Wen-Chao Geng , Kang Cai , Dong-Sheng Guo . Molecular recognition of cyclophanes in water. Chinese Chemical Letters, 2024, 35(5): 109161-. doi: 10.1016/j.cclet.2023.109161
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