Citation: Yu Wang, Dian-Ming Zhou, Zhan Wu, Li-Juan Tang, Jian-Hui Jiang. Terminal protection of small molecule-linked ssDNA-SWNT nanoassembly for sensitive detection of small molecule and protein interaction[J]. Chinese Chemical Letters, ;2013, 24(2): 107-110.
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The interactions between small molecules and proteins constitute a critical regulatory mechanism in many fundamental biological processes. A novel biosensing strategy has been developed for sensitive and selective detection of small molecule and protein interaction on the basis of terminal protection of small molecule-linked ssDNA-SWNT nanoassembly. The developed strategy is demonstrated using folate and its binding protein folate receptor (FR) as a model case. The results reveal the developed technique displays superb resistance to non-specific binding, very low detection limit as low as subnanomolar, and a wide dynamic range from 100 pmol/L to 500 nmol/L of FR. Thus, it may offer a simple, cost-effective, highly selective and sensitive platform for homogeneous fluorescence detection of small molecule-protein interaction and related biochemical studies.
-
-
[1]
[1] (a) B.R. Stockwell, Exploring biology with small organic molecules, Nature 432 (2004) 846-854;
-
[2]
(b) X.H. Gao, Y.Y. Cui, R.M. Levenson, L.W.K. Chung, S.M. Nei, In vivo cancer targeting and imaging with semiconductor quantum dots, Nat. Biotechnol. 22 (2004) 969-976.
-
[3]
[2] J. Taunton, C.A. Hassig, S.L. Schreiber, A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p, Science 272 (1996) 408-411.
-
[4]
[3] (a) A. Petrov, V. Okhonin, M. Berezovski, S.N. Krylov, Kinetic capillary electrophoresis (KCE): a conceptual platform for kinetic homogeneous affinity methods, J. Am. Chem. Soc. 127 (2005) 17104-17110;
-
[5]
(b) A.P. Drabovich, M.V. Berezovski, M.U. Musheev, S.N. Krylov, Selection of smart small-molecule: the proof of principle, Anal. Chem. 81 (2009) 490-494.
-
[6]
[4] (a) M.A. Cooper, Optical biosensors in drug discovery, Nat. Rev. Drug Discov. 1 (2002) 515-528;
-
[7]
(b) M.A. Wear, A. Patterson, K. Malone, et al., A surface plasmon resonance-based assay for small molecule inhibitors of human cyclophilin A, Anal. Biochem. 345 (2005) 214-226.
-
[8]
[5] (a) I.L. Medintz, A.R. Clapp, H. Mattoussi, et al., Self-assembled nanoscale biosensors based on quantum dot FRET donors, Nat. Mater. 2 (2003) 630-638;
-
[9]
(b) E.R. Goldman, I.L. Medintz, J.L. Whitley, et al., A hybrid quantum dot-antibody fragment fluorescence resonance energy transfer-based TNT sensor, J. Am. Chem. Soc. 127 (2005) 6744-6751.
-
[10]
[6] D.A. Bachovchin, S.J. Brown, H. Rosen, B.F. Cravatt, Identification of selective inhibitors of uncharacterized enzymes by high-throughout screening with fluorescent activity-based probes, Nat. Biotechnol. 27 (2009) 387-394.
-
[11]
[7] Z.Wu, Z. Zhen, J.H. Jiang, G.L. Shen, R.Q. Yu, Terminal protection of small-moleculelinked DNA for sensitive electrochemical detection of protein binding via selective carbon nanotube assembly, J. Am. Chem. Soc. 131 (2009) 12325-12332.
-
[12]
[8] (a) Z. Wu, H.Q. Wang, M. Guo, et al., Terminal protection of small molecule-linked DNA: A versatile biosensor platform for protein binding and gene typing assay, Anal. Chem. 83 (2011) 3104-3111;
-
[13]
(b) Z. Zhen, L.J. Tang, J. Lin, et al., Endonucleolytic inhibition assay of DNA/Fok I transducer as a sensitive platform for homogeneous fluorescence detection of small molecule-protein interactions, Anal. Chem. 84 (2012) 5708-5715;
-
[14]
(c) Y. Cao, S. Zhu, J.C. Yu, et al., Protein detection based on small molecule-linked DNA, Anal. Chem. 84 (2012) 4314-4320;
-
[15]
(d) H.Q. Wang, Z. Wu, L.J. Tang, R.Q. Yu, J.H. Jiang, Fluorescence protection assay: a novel homogeneous assay platform toward development of aptamer sensors for protein detection, Nucleic Acids Res. 39 (2011) e122.
-
[16]
[9] (a) N.W.S. Kim, M. O'Connell, J.A. Wisdom, H.J. Dai, Carbon nanotubes as multifunctional biological transporters and near-infrared agents for selective cancer cell destruction, Proc. Natl. Acad. Sci. U.S.A. 102 (2005) 11600-11605;
-
[17]
(b) E.S. Jeng, A.E. Moll, A.C. Roy, J.B. Gastala, M.S. Strano, Detection of DNA hybridization using the near-infrared band-gap fluorescence of single-walled carbon nanotubes, Nano Lett. 6 (2006) 371-375.
-
[18]
[10] R.H. Yang, J.Y. Jin, Y. Chen, et al., Carbon nanotube-quenched fluorescent oligonucleotides: probes that fluoresce upon hybridization, J. Am. Chem. Soc. 130 (2008) 8351-8358.
-
[19]
[11] M. Zheng, A. Jagota, E.D. Semke, et al., DNA-assisted dispersion and separation of carbon nanotubes, Nat. Mater. 2 (2003) 338-342.
-
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