Citation: XU Xian-Jin, SU Ji-Guo, LIU Bin, LI Chun-Hua, TAN Jian-Jun, ZHANG Xiao-Yi, CHEN Wei-Zu, WANG Cun-Xin. Reverse Virtual Screening on Persistent Organic Pollutants 4,4’-DDE and CB-153[J]. Acta Physico-Chimica Sinica, ;2013, 29(10): 2276-2285. doi: 10.3866/PKU.WHXB201307161
-
Persistent organic pollutants (POPs) cause various diseases in both human and wildlife and have become a new global environmental problem. The toxic effects of POPs can be induced through their binding to specific proteins in the body. In the present work, a reverse virtual screening method based on molecular docking was used to search for potential protein targets for two POPs, 4,4'-dichlorodiphenyldichloroethane (4, 4'-DDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (CB-153), froma protein structure database. Targets ranked in the top 5%were chosen for analysis using experimental information. All known targets appeared in the top 5% of targets. This study not only increases understanding of the toxic mechanismof POPs, but may also aid the design of novel recognition elements in biosensors.
-
-
[1]
(1) Jones, K. C.; de Voogt, P. Environ. Pollut. 1999, 100, 209. doi: 10.1016/S0269-7491(99)00098-6
-
[2]
(2) Yu, G.; Niu, J. F.; Huang, J. Persistent Organic Pollutants——a New lbal Environmental Problem; Science Press: Beijing,2005; pp 1-164. [余刚, 牛军峰, 黄俊.持久性有机污染物——新的全球性环境问题. 北京: 科学出版社, 2005: 1-164.]
-
[3]
(3) Lohmann, R.; Breivik, K.; Dachs, J.; Muir, D. Environ. Pollut.2007, 150, 150. doi: 10.1016/j.envpol.2007.06.051
-
[4]
(4) Mandal, P. K. J. Comp. Physiol. B 2005, 175, 221. doi: 10.1007/s00360-005-0483-3
-
[5]
(5) Xu, X. J.; Cannistraro, S.; Bizzarri, A. R.; Zeng, Y.; Chen, W.Z.; Wang, C. H. Chem. Res. Chin. Univ. 2013, 29, 299. doi: 10.1007/s40242-013-2384-4
-
[6]
(6) Lintelmann, J.; Katayama, A.; Kurihara, N.; Shore, L.; Wenzel,A. Pure Appl. Chem. 2003, 75, 631. doi: 10.1351/pac200375050631
-
[7]
(7) Vandenberg, L. N.; Colborn, T.; Hayes, T. B.; Heindel, J. J.;Jacobs, D. R.; Lee, D. H.; Shioda, T.; Soto, A. M.; vomSaal, F.S.; Welshons, W. V.; Zoeller, R. T.; Myers, J. P. Endocr. Rev.2012, 33, 378. doi: 10.1210/er.2011-1050
-
[8]
(8) Luccio-Camelo, D. C.; Prins, G. S. J. Steroid Biochem. 2011,127, 74. doi: 10.1016/j.jsbmb.2011.04.004
-
[9]
(9) Chambers, J. P.; Arulanandam, B. P.; Matta, L. L.; Weis, A.;Valdes, J. J. Curr. Issues Mol. Biol. 2008, 10, 1.
-
[10]
(10) Rodriguez-Mozaz, S.; de Alda, M. J. L.; Barcelo, D. Anal. Bioanal. Chem. 2006, 386, 1025. doi: 10.1007/s00216-006-0574-3
-
[11]
(11) Rodriguez-Mozaz, S.; Marco, M. P.; Lopez de Alda, M. J.;Barcelo, D. Anal. Bioanal. Chem. 2004, 378, 588. doi: 10.1007/s00216-003-2385-0
-
[12]
(12) Rognan, D. Mol. Inform. 2010, 29, 176. doi: 10.1002/minf.v29:3
-
[13]
(13) Li, H.; Gao, Z.; Kang, L.; Zhang, H.; Yang, K.; Yu, K.; Luo, X.;Zhu, W.; Chen, K.; Shen, J.; Wang, X.; Jiang, H. Nucleic Acids Res. 2006, 34,W219.
-
[14]
(14) Li, X. D.; Xu, X. J.; Hu, J. Acta Phys. -Chim. Sin. 2008, 24, 307.[李旭东,徐筱杰,胡娟.物理化学学报, 2008, 24, 307.]doi: 10.3866/PKU.WHXB20080221
-
[15]
(15) Yang, L.; Luo, H.; Chen, J.; Xing, Q.; He, L. Nucleic Acids Res.2009, 37,W406.
-
[16]
(16) Zhang, X. Y.; Liu, B.; He, H. Q.; Yang, D.; Wang, C. X. Acta Phys. -Chim. Sin., 2009, 25, 817. [张小轶,刘斌,何红秋,杨东,王存新. 物理化学学报, 2009, 25, 817.] doi: 10.3866/PKU.WHXB20090505
-
[17]
(17) Kinnings, S. L.; Jackson, R. M. J. Chem. Inf. Model. 2011, 51,624. doi: 10.1021/ci1003174
-
[18]
(18) Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; et al . Gaussian 03,Revision B.05; Gaussian Inc.: Wallingford, CT, 2004.
-
[19]
(19) Kellenberger, E.; Muller, P.; Schalon, C.; Bret, G.; Foata, N.;Rognan, D. J. Chem. Inf. Model. 2006, 46, 717. doi: 10.1021/ci050372x
-
[20]
(20) Meslamani, J.; Rognan, D.; Kellenberger, E. Bioinformatics2011, 27, 1324. doi: 10.1093/bioinformatics/btr120
-
[21]
(21) Gao, Z.; Li, H.; Zhang, H.; Liu, X.; Kang, L.; Luo, X.; Zhu, W.;Chen, K.; Wang, X.; Jiang, H. BMC Bioinformatics 2008, 9,104. doi: 10.1186/1471-2105-9-104
-
[22]
(22) Morris, G. M.; Huey, R.; Lindstrom, W.; Sanner, M. F.; Belew,R. K.; odsell, D. S.; Olson, A. J. J. Comput. Chem. 2009, 30,2785. doi: 10.1002/jcc.v30:16
-
[23]
(23) Gasteiger, J.; Marsili, M. Tetrahedron 1980, 36, 3219. doi: 10.1016/0040-4020(80)80168-2
-
[24]
(24) Huey, R.; Morris, G. M.; Olson, A. J.; odsell, D. S.J. Comput. Chem. 2007, 28, 1145.
-
[25]
(25) Hauser, R.; Singh, N. P.; Chen, Z.; Pothier, L.; Altshul, L. Hum. Reprod. 2003, 18, 2525. doi: 10.1093/humrep/deg508
-
[26]
(26) Richthoff, J.; Rylander, L.; Jonsson, B. A.; Akesson, H.;Hagmar, L.; Nilsson-Ehle, P.; Stridsberg, M.; Giwercman, A.Environ. Health Perspect. 2003, 111, 409. doi: 10.1289/ehp.111-a409
-
[27]
(27) Rignell-Hydbom, A.; Rylander, L.; Giwercman, A.; Jonsson, B.A. G.; Nilsson-Ehle, P.; Hagmar, L. Hum. Reprod. 2004, 19,2066. doi: 10.1093/humrep/deh362
-
[28]
(28) Gao, W.; Bohl, C. E.; Dalton, J. T. Chem. Rev. 2005, 105,3352. doi: 10.1021/cr020456u
-
[29]
(29) Hauser, R.; Chen, Z. Y.; Pothier, L.; Ryan, L.; Altshul, L.Environ. Health Persp. 2003, 111, 1505. doi: 10.1289/ehp.6175
-
[30]
(30) Spano, M.; Toft, G.; Hagmar, L.; Eleuteri, P.; Rescia, M.;Rignell-Hydbom, A.; Tyrkiel, E.; Zvyezday, V.; Bonde, J. P.Inuendo. Hum. Reprod. 2005, 20, 3488. doi: 10.1093/humrep/dei297
-
[31]
(31) Bjork, C.; Nenonen, H.; Giwercman, A.; Bergman, A.; Rylander,L.; Giwercman, Y. L. Reprod. Toxicol. 2011, 32, 293. doi: 10.1016/j.reprotox.2011.06.075
-
[32]
(32) Hardell, L.; van Bavel, B.; Lindstrom, G.; Carlberg, M.;Dreifaldt, A. C.;Wijkstrom, H.; Starkhammar, H.; Eriksson, M.;Hallquist, A.; Kolmert, T. Environ. Health Persp. 2003, 111, 930.
-
[33]
(33) Tiido, T.; Rignell-Hydbom, A.; Jonsson, B. A. G.; Giwercman,Y. L.; Pedersen, H. S.; Wojtyniak, B.; Ludwicki, J. K.; Lesovoy,V.; Zvyezday, V.; Spano, M.; Manicardi, G. C.; Bizzaro, D.;Bonefeld-Jorgensen, E. C.; Toft, G.; Bonde, J. P.; Rylander, L.;Hagmar, L.; Giwercman, A.; Grp, I. Environ. Health Persp.2006, 114, 718.
-
[34]
(34) Wallace, A. C.; Laskowski, R. A.; Thornton, J. M. Protein Eng.1995, 8, 127. doi: 10.1093/protein/8.2.127
-
[35]
(35) Li, E.; Norris, A. W. Annu. Rev. Nutr. 1996, 16, 205. doi: 10.1146/annurev.nu.16.070196.001225
-
[36]
(36) Weinshilboum, R. M.; Otterness, D. M.; Szumlanski, C. L.Annu. Rev. Pharmacol. Toxicol. 1999, 39, 19. doi: 10.1146/annurev.pharmtox.39.1.19
-
[37]
(37) Binda, C.; Newton-Vinson, P.; Hubalek, F.; Edmondson, D. E.;Mattevi, A. Nat. Struct. Biol. 2002, 9, 22. doi: 10.1038/nsb732
-
[38]
(38) Kitamura, S.; Shimizu, Y.; Shiraga, Y.; Yoshida, M.; Sugihara,K.; Ohta, S. Drug Metab. Dispos. 2002, 30, 113. doi: 10.1124/dmd.30.2.113
-
[39]
(39) Karmaus, W.; Kuehr, J.; Kruse, H. Arch. Environ. Health 2001,56, 485. doi: 10.1080/00039890109602896
-
[40]
(40) Karmaus, W.; Davis, S.; Chen, Q.; Kuehr, J.; Kruse, H. Paediatr. Perinat. Epidemiol. 2003, 17, 212. doi: 10.1046/j.1365-3016.2003.00488.x
-
[1]
-
-
[1]
Xinyi Hong , Tailing Xue , Zhou Xu , Enrong Xie , Mingkai Wu , Qingqing Wang , Lina Wu . Non-Site-Specific Fluorescent Labeling of Proteins as a Chemical Biology Experiment. University Chemistry, 2024, 39(4): 351-360. doi: 10.3866/PKU.DXHX202310010
-
[2]
Jiarong Feng , Yejie Duan , Chu Chu , Dezhen Xie , Qiu'e Cao , Peng Liu . Preparation and Application of a Streptomycin Molecularly Imprinted Electrochemical Sensor: A Suggested Comprehensive Analytical Chemical Experiment. University Chemistry, 2024, 39(8): 295-305. doi: 10.3866/PKU.DXHX202401016
-
[3]
Zhibei Qu , Changxin Wang , Lei Li , Jiaze Li , Jun Zhang . Organoid-on-a-Chip for Drug Screening and the Inherent Biochemistry Principles. University Chemistry, 2024, 39(7): 278-286. doi: 10.3866/PKU.DXHX202311039
-
[4]
Tiantian MA , Sumei LI , Chengyu ZHANG , Lu XU , Yiyan BAI , Yunlong FU , Wenjuan JI , Haiying YANG . Methyl-functionalized Cd-based metal-organic framework for highly sensitive electrochemical sensing of dopamine. Chinese Journal of Inorganic Chemistry, 2024, 40(4): 725-735. doi: 10.11862/CJIC.20230351
-
[5]
Lu XU , Chengyu ZHANG , Wenjuan JI , Haiying YANG , Yunlong FU . Zinc metal-organic framework with high-density free carboxyl oxygen functionalized pore walls for targeted electrochemical sensing of paracetamol. Chinese Journal of Inorganic Chemistry, 2024, 40(5): 907-918. doi: 10.11862/CJIC.20230431
-
[6]
Jing SU , Bingrong LI , Yiyan BAI , Wenjuan JI , Haiying YANG , Zhefeng Fan . Highly sensitive electrochemical dopamine sensor based on a highly stable In-based metal-organic framework with amino-enriched pores. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1337-1346. doi: 10.11862/CJIC.20230414
-
[7]
Hui Liu , Shupeng Zhang , Yuntian Zhang , Wei Dong , Yuji Liu , Bingxin Deng , Dongping Chen , Yongxing Tang . Research on the Application of Virtual Reality (VR) Technology in the Teaching of Organic Chemistry. University Chemistry, 2024, 39(8): 64-71. doi: 10.3866/PKU.DXHX202312028
-
[8]
Peiran ZHAO , Yuqian LIU , Cheng HE , Chunying DUAN . A functionalized Eu3+ metal-organic framework for selective fluorescent detection of pyrene. Chinese Journal of Inorganic Chemistry, 2024, 40(4): 713-724. doi: 10.11862/CJIC.20230355
-
[9]
Tianyun Chen , Ruilin Xiao , Xinsheng Gu , Yunyi Shao , Qiujun Lu . Synthesis, Crystal Structure, and Mechanoluminescence Properties of Lanthanide-Based Organometallic Complexes. University Chemistry, 2024, 39(5): 363-370. doi: 10.3866/PKU.DXHX202312017
-
[10]
Zeyu XU , Anlei DANG , Bihua DENG , Xiaoxin ZUO , Yu LU , Ping YANG , Wenzhu YIN . Evaluation of the efficacy of graphene oxide quantum dots as an ovalbumin delivery platform and adjuvant for immune enhancement. Chinese Journal of Inorganic Chemistry, 2024, 40(6): 1065-1078. doi: 10.11862/CJIC.20240099
-
[11]
Jingjing QING , Fan HE , Zhihui LIU , Shuaipeng HOU , Ya LIU , Yifan JIANG , Mengting TAN , Lifang HE , Fuxing ZHANG , Xiaoming ZHU . Synthesis, structure, and anticancer activity of two complexes of dimethylglyoxime organotin. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1301-1308. doi: 10.11862/CJIC.20240003
-
[12]
Liang TANG , Jingfei NI , Kang XIAO , Xiangmei LIU . Synthesis and X-ray imaging application of lanthanide-organic complex-based scintillators. Chinese Journal of Inorganic Chemistry, 2024, 40(10): 1892-1902. doi: 10.11862/CJIC.20240139
-
[13]
Bao Jia , Yunzhe Ke , Shiyue Sun , Dongxue Yu , Ying Liu , Shuaishuai Ding . Innovative Experimental Teaching for the Preparation and Modification of Conductive Organic Polymer Thin Films in Undergraduate Courses. University Chemistry, 2024, 39(10): 271-282. doi: 10.12461/PKU.DXHX202404121
-
[14]
Hongbo Zhang , Yihong Tang , Suxia Zhang , Yuanting Li . Electrochemical Monitoring of Photocatalytic Degradation of Phenol Pollutants: A Recommended Comprehensive Analytical Chemistry Experiment. University Chemistry, 2024, 39(6): 326-333. doi: 10.3866/PKU.DXHX202310013
-
[15]
Yuanpei ZHANG , Jiahong WANG , Jinming HUANG , Zhi HU . Preparation of magnetic mesoporous carbon loaded nano zero-valent iron for removal of Cr(Ⅲ) organic complexes from high-salt wastewater. Chinese Journal of Inorganic Chemistry, 2024, 40(9): 1731-1742. doi: 10.11862/CJIC.20240077
-
[16]
Changjun You , Chunchun Wang , Mingjie Cai , Yanping Liu , Baikang Zhu , Shijie Li . 引入内建电场强化BiOBr/C3N5 S型异质结中光载流子分离以实现高效催化降解微污染物. Acta Physico-Chimica Sinica, 2024, 40(11): 2407014-. doi: 10.3866/PKU.WHXB202407014
-
[17]
Wenxiu Yang , Jinfeng Zhang , Quanlong Xu , Yun Yang , Lijie Zhang . Bimetallic AuCu Alloy Decorated Covalent Organic Frameworks for Efficient Photocatalytic Hydrogen Production. Acta Physico-Chimica Sinica, 2024, 40(10): 2312014-. doi: 10.3866/PKU.WHXB202312014
-
[18]
Aiai WANG , Lu ZHAO , Yunfeng BAI , Feng FENG . Research progress of bimetallic organic framework in tumor diagnosis and treatment. Chinese Journal of Inorganic Chemistry, 2024, 40(10): 1825-1839. doi: 10.11862/CJIC.20240225
-
[19]
Feng Sha , Xinyan Wu , Ping Hu , Wenqing Zhang , Xiaoyang Luan , Yunfei Ma . Design of Course Ideology and Politics for the Comprehensive Organic Synthesis Experiment of Benzocaine. University Chemistry, 2024, 39(2): 110-115. doi: 10.3866/PKU.DXHX202307082
-
[20]
Xinyu Zhu , Meili Pang . Application of Functional Group Addition Strategy in Organic Synthesis. University Chemistry, 2024, 39(3): 218-230. doi: 10.3866/PKU.DXHX202308106
-
[1]
Metrics
- PDF Downloads(717)
- Abstract views(806)
- HTML views(6)