Citation: LIN Ke-Jiang, ZHU Dong-Ji, LENG Yong-Gan, YOU Qi-Dong. Structural Characterization of Human Parathyroid Hormone 1 Receptor[J]. Acta Physico-Chimica Sinica, ;2012, 28(07): 1783-1789. doi: 10.3866/PKU.WHXB201204192
-
Parathyroid hormone 1 receptor (PTH1R) is a member of the class B G-protein coupled receptor (B-GPCR) family and is involved in bone formation. Its substrate parathyroid hormone (PTH) and its analogues are being developed as anti-osteoporosis therapeutics. The structure-based rational drug design of PTH1R substrates has been hampered by the lack of experimentally determined three-dimensional (3D) structures from techniques such as nuclear magnetic resonance (NMR) and X-ray crystallography. Here, we have constructed a 3D model of PTH1R including its extracellular domain (ECD), transmembrane domain (TM) and other domains using a homology modeling approach. In addition, to capture the ligand-receptor interactions, we have manually docked human parathyroid hormone (1-34) into the top scoring receptor model, and subjected the PTH-PTH1R complex to an unconstrained energy minimization. The integral 3D receptor model provides an easier way to understand the interactions involved at the TM, ECD, and other domains. Furthermore, the parameters of hydrogen bonding, hydrophobic, and other interactions from the ligand-receptor model, enabled us to elucidate the important interactions between PTH (1-34) and PTH1R. This ligand-receptor model could potentially serve as a tool for structure-based virtual screening in the development of non-peptide based anti-osteoporosis drugs.
-
-
[1]
(1) Potts, J. T.; Gardella, T. J. Annals of the New York Academy of Sciences 2007, 1117, 196. doi: 10.1196/annals.1402.088
-
[2]
(2) Potts, J. T. J. Endocrinol. 2005, 187, 311. doi: 10.1677/joe.1.06057
-
[3]
(3) Murray, T. M.; Rao, L. G.; Divieti, P.; Bringhurst, F. R. Endocr. Rev. 2005, 26, 78. doi: 10.1210/er.2003-0024
-
[4]
(4) Gardella, T. J.; Juppner, H. Trends Endocrinol. Metab. 2001, 12,210. doi: 10.1016/S1043-2760(01)00409-X
-
[5]
(5) Juppner, H.; Abou-Samra, A. B.; Freeman, M.; Kong, X. F.;Schipani, E.; Richards, J.; Kolakowski, L. F., Jr.; Hock, J.; Potts,J. T., Jr.; Kronenberg, H. M. Science 1991, 254, 1024. doi: 10.1126/science.1658941
-
[6]
(6) Pioszak, A. A.; Harikumar, K. G.; Parker, N. R.; Miller, L. J.;Xu, H. E. J. Biol. Chem. 2010, 285, 12435. doi: 10.1074/jbc.M109.093138
-
[7]
(7) Pioszak, A. A.; Xu, H. E. Proc. Natl. Acad. Sci. U. S. A. 2008,105, 5034. doi: 10.1073/pnas.0801027105
-
[8]
(8) Jin, L.; Briggs, S. L.; Chandrasekhar, S.; Chirgadze, N. Y.;Clawson, D. K.; Schevitz, R.W.; Smiley, D. L.; Tashjian, A. H.;Zhang, F. J. Biol. Chem. 2000, 275, 27238.
-
[9]
(9) Rolz, C.; Pellegrini, M.; Mierke, D. F. Biochemistry 1999, 38,6397. doi: 10.1021/bi9829276
-
[10]
(10) Discovery Studio, 2.5; Accelrys Software Inc.: San Die , US,2010.
-
[11]
(11) Pellegrini, M.; Bisello, A.; Rosenblatt, M.; Chorev, M.; Mierke,D. F. Biochemistry 1998, 37, 12737. doi: 10.1021/bi981265h
-
[12]
(12) Cherezov, V.; Rosenbaum, D. M.; Hanson, M. A.; Rasmussen,S. G.; Thian, F. S.; Kobilka, T. S.; Choi, H. J.; Kuhn, P.;Weis,W. I.; Kobilka, B. K.; Stevens, R. C. Science 2007, 318, 1258.doi: 10.1126/science.1150577
-
[13]
(13) Kerfeld, C. A.; Anwar, H. P.; Interrante, R.; Merchant, S.;Yeates, T. O. J. Mol. Biol. 1995, 250, 627. doi: 10.1006/jmbi.1995.0404
-
[14]
(14) Thompson, J. D.; Higgins, D. G.; Gibson, T. J. Nucleic Acids Res. 1994, 22, 4673. doi: 10.1093/nar/22.22.4673
-
[15]
(15) Spassov, V.; Yan, L.; Szalma, S. J. Phys. Chem. B 2002, 106,8726. doi: 10.1021/jp020674r
-
[16]
(16) Im,W.; Lee, M. S.; Brooks, C. L. J. Comput. Chem. 2003, 24,1691. doi: 10.1002/jcc.10321
-
[17]
(17) Luthy, R.; Bowie, J. U.; Eisenberg, D. Nature 1992, 356, 83.doi: 10.1038/356083a0
-
[18]
(18) Lovell, S. C.; Davis, I.W.; Arendall,W. B., III; de Bakker, P. I.;Word, J. M.; Prisant, M. G.; Richardson, J. S.; Richardson, D.C. Proteins 2003, 50, 437. doi: 10.1002/prot.10286
-
[19]
(19) Adams, A. E.; Bisello, A.; Chorev, M.; Rosenblatt, M.; Suva, L.J. Mol. Endocrinol. 1998, 12, 1673. doi: 10.1210/me.12.11.1673
-
[20]
(20) Fletcher, R.; Powell, M. J. D. The Computer Journal 1963, 6,163.
-
[21]
(21) Grippo, L.; Lucidi, S. Mathematical Programming 1997, 78,375.
-
[22]
(22) MOE, 2009; Chemical Computing Group: Montreal, Canada,2009.
-
[23]
(23) Clark, A. M.; Labute, P. J. Chem. Inf. Model. 2007, 47, 1933.doi: 10.1021/ci7001473
-
[24]
(24) Greenberg, Z.; Bisello, A.; Mierke, D. F.; Rosenblatt, M.;Chorev, M. Biochemistry 2000, 39, 8142. doi: 10.1021/bi000195n
-
[25]
(25) Sali, A. Mol. Med. Today 1995, 1, 270. doi: 10.1016/S1357-4310(95)91170-7
-
[26]
(26) Dean, T.; Khatri, A.; Potetinova, Z.;Willick, G. E.; Gardella, T.J. J. Biol. Chem. 2006, 281, 32485. doi: 10.1074/jbc.M606179200
-
[27]
(27) Barbier, J. R.; Gardella, T. J.; Dean, T.; MacLean, S.;Potetinova, Z.; Whitfield, J. F.;Willick, G. E. J. Biol. Chem.2005, 280, 23771. doi: 10.1074/jbc.M500817200
-
[28]
(28) Mierke, D. F.; Maretto, S.; Schievano, E.; DeLuca, D.; Bisello,A.; Mammi, S.; Rosenblatt, M.; Peggion, E.; Chorev, M.Biochemistry 1997, 36, 10372. doi: 10.1021/bi970771o
-
[29]
(29) Caporale, A.; Biondi, B.; Schievano, E.;Wittelsberger, A.;Mammi, S.; Peggion, E. Eur. J. Pharmacol. 2009, 611, 1. doi: 10.1016/j.ejphar.2009.03.040
-
[30]
(30) Pioszak, A. A.; Parker, N. R.; Gardella, T. J.; Xu, H. E. J. Biol. Chem. 2009, 284, 28382. doi: 10.1074/jbc.M109.022905
-
[31]
(31) Piserchio, A.; Bisello, A.; Rosenblatt, M.; Chorev, M.; Mierke,D. F. Biochemistry 2000, 39, 8153. doi: 10.1021/bi000196f
-
[32]
(32) Hoare, S. R. Drug Discov. Today 2005, 10, 417. doi: 10.1016/S1359-6446(05)03370-2
-
[33]
(33) Mierke, D. F.; Mao, L.; Pellegrini, M.; Piserchio, A.; Plati, J.;Tsomaia, N. Biochem. Soc. Trans. 2007, 35, 721. doi: 10.1042/BST0350721
-
[34]
(34) Rolz, C.; Mierke, D. F. Biophys. Chem. 2001, 89, 119. doi: 10.1016/S0301-4622(00)00222-2
-
[35]
(35) Barbier, J. R.; MacLean, S.; Whitfield, J. F.; Morley, P.;Willick,G. E. Biochemistry 2001, 40, 8955. doi: 10.1021/bi010460k
-
[36]
(36) Luck, M. D.; Carter, P. H.; Gardella, T. J. Mol. Endocrinol.1999, 13, 670. doi: 10.1210/me.13.5.670
-
[37]
(37) Gardella, T. J.; Juppner, H.;Wilson, A. K.; Keutmann, H. T.;Abou-Samra, A. B.; Segre, G. V.; Bringhurst, F. R.; Potts, J. T.,Jr.; Nussbaum, S. R.; Kronenberg, H. M. Endocrinology 1994,135, 1186. doi: 10.1210/en.135.3.1186
-
[38]
(38) Bisello, A.; Adams, A. E.; Mierke, D. F.; Pellegrini, M.;Rosenblatt, M.; Suva, L. J.; Chorev, M. J. Biol. Chem. 1998,273, 22498. doi: 10.1074/jbc.273.35.22498
-
[39]
(39) Monticelli, L.; Mammi, S.; Mierke, D. F. Biophys. Chem. 2002,95, 165. doi: 10.1016/S0301-4622(02)00005-4
-
[40]
(40) Gensure, R. C.; Shimizu, N.; Tsang, J.; Gardella, T. J. Mol. Endocrinol. 2003, 17, 2647. doi: 10.1210/me.2003-0275
-
[1]
-
-
[1]
Yixuan Zhu , Qingtong Wang , Jin Li , Lin Chen , Junlong Zhao . Blog of Oxytocin. University Chemistry, 2024, 39(9): 134-140. doi: 10.12461/PKU.DXHX202310090
-
[2]
Yukun Xing , Xiaoyu Xie , Fangfang Chen . A Sunlit Gift: Vitamin D. University Chemistry, 2024, 39(9): 28-34. doi: 10.12461/PKU.DXHX202402006
-
[3]
Shijie Li , Ke Rong , Xiaoqin Wang , Chuqi Shen , Fang Yang , Qinghong Zhang . Design of Carbon Quantum Dots/CdS/Ta3N5 S-Scheme Heterojunction Nanofibers for Efficient Photocatalytic Antibiotic Removal. Acta Physico-Chimica Sinica, 2024, 40(12): 2403005-. doi: 10.3866/PKU.WHXB202403005
-
[4]
Junjie Zhang , Yue Wang , Qiuhan Wu , Ruquan Shen , Han Liu , Xinhua Duan . Preparation and Selective Separation of Lightweight Magnetic Molecularly Imprinted Polymers for Trace Tetracycline Detection in Milk. University Chemistry, 2024, 39(5): 251-257. doi: 10.3866/PKU.DXHX202311084
-
[5]
Yaling Chen . Basic Theory and Competitive Exam Analysis of Dynamic Isotope Effect. University Chemistry, 2024, 39(8): 403-410. doi: 10.3866/PKU.DXHX202311093
-
[6]
Kexin Dong , Chuqi Shen , Ruyu Yan , Yanping Liu , Chunqiang Zhuang , Shijie Li . Integration of Plasmonic Effect and S-Scheme Heterojunction into Ag/Ag3PO4/C3N5 Photocatalyst for Boosted Photocatalytic Levofloxacin Degradation. Acta Physico-Chimica Sinica, 2024, 40(10): 2310013-. doi: 10.3866/PKU.WHXB202310013
-
[7]
Xiaoning TANG , Junnan LIU , Xingfu YANG , Jie LEI , Qiuyang LUO , Shu XIA , An XUE . Effect of sodium alginate-sodium carboxymethylcellulose gel layer on the stability of Zn anodes. Chinese Journal of Inorganic Chemistry, 2024, 40(8): 1452-1460. doi: 10.11862/CJIC.20240191
-
[8]
Jianjun LI , Mingjie REN , Lili ZHANG , Lingling ZENG , Huiling WANG , Xiangwu MENG . UV-assisted degradation of tetracycline hydrochloride by MnFe2O4@activated carbon activated persulfate. Chinese Journal of Inorganic Chemistry, 2024, 40(10): 1869-1880. doi: 10.11862/CJIC.20240187
-
[9]
Wanqun Hu , Pingping Zhu , Yuan Zheng , Wanqun Zhang , Wei Shao , Hong Wu , Qiang Zhou , Kaiping Yang , Xiang Sheng . Design and Practice of Ideological and Political Case Study in Instrumental Analysis Experiment Course: the Extraction and Structural Identification of Artemisinin. University Chemistry, 2024, 39(2): 203-207. doi: 10.3866/PKU.DXHX202310062
-
[10]
Shui Hu , Houjin Li , Zhenming Zang , Lianyun Li , Rong Lai . Integration of Science and Education Promotes the Construction of Undergraduate-to-Master’s Integration Experimental Courses: A Case Study on the Extraction, Separation and Identification of Artemisinin from Artemisia annua. University Chemistry, 2024, 39(4): 314-321. doi: 10.3866/PKU.DXHX202310063
-
[11]
Liwei Wang , Guangran Ma , Li Wang , Fugang Xu . A Comprehensive Analytical Chemistry Experiment: Colorimetric Detection of Vitamin C Using Nanozyme and Smartphone. University Chemistry, 2024, 39(8): 255-262. doi: 10.3866/PKU.DXHX202312094
-
[12]
Rong Tian , Yadi Yang , Naihao Lu . Comprehensive Experimental Design of Undergraduate Students Based on Interdisciplinarity: Study on the Effect of Quercetin on Chlorination Activity of Myeloperoxidase. University Chemistry, 2024, 39(8): 247-254. doi: 10.3866/PKU.DXHX202312064
-
[13]
Jingzhao Cheng , Shiyu Gao , Bei Cheng , Kai Yang , Wang Wang , Shaowen Cao . 4-氨基-1H-咪唑-5-甲腈修饰供体-受体型氮化碳光催化剂的构建及其高效光催化产氢研究. Acta Physico-Chimica Sinica, 2024, 40(11): 2406026-. doi: 10.3866/PKU.WHXB202406026
-
[14]
Chuanming GUO , Kaiyang ZHANG , Yun WU , Rui YAO , Qiang ZHAO , Jinping LI , Guang LIU . Performance of MnO2-0.39IrOx composite oxides for water oxidation reaction in acidic media. Chinese Journal of Inorganic Chemistry, 2024, 40(6): 1135-1142. doi: 10.11862/CJIC.20230459
-
[15]
Ke Li , Chuang Liu , Jingping Li , Guohong Wang , Kai Wang . 钛酸铋/氮化碳无机有机复合S型异质结纯水光催化产过氧化氢. Acta Physico-Chimica Sinica, 2024, 40(11): 2403009-. doi: 10.3866/PKU.WHXB202403009
-
[16]
Xiao-Qi Xu , Yapei Wang . Practice of Cultivating Multi-Disciplinary Talents with Comprehensive Skills through Demand-Driven, Individualized Education, and Humanities and Science Integration. University Chemistry, 2024, 39(6): 90-97. doi: 10.3866/PKU.DXHX202311049
-
[17]
Hui Xiong , Yan Wang , Rongxian Bai , Yongqi Wu , Chengmei Liu , Yuefa Gong , Jian Zhang . Development of a Compound Talent Training System Based on Virtual Technology: a Case Study of Chemical Unit and Process Simulation Practices. University Chemistry, 2024, 39(10): 314-317. doi: 10.12461/PKU.DXHX202405071
-
[18]
Zhuoming Liang , Ming Chen , Zhiwen Zheng , Kai Chen . Multidimensional Studies on Ketone-Enol Tautomerism of 1,3-Diketones By 1H NMR. University Chemistry, 2024, 39(7): 361-367. doi: 10.3866/PKU.DXHX202311029
-
[19]
Liyang ZHANG , Dongdong YANG , Ning LI , Yuanyu YANG , Qi MA . Crystal structures, luminescent properties and Hirshfeld surface analyses of three cadmium(Ⅱ) complexes based on 2-(3-(pyridin-2-yl)-1H-pyrazol-1-yl)benzoate. Chinese Journal of Inorganic Chemistry, 2024, 40(10): 1943-1952. doi: 10.11862/CJIC.20240079
-
[20]
You Wu , Chang Cheng , Kezhen Qi , Bei Cheng , Jianjun Zhang , Jiaguo Yu , Liuyang Zhang . ZnO/D-A共轭聚合物S型异质结高效光催化产H2O2及其电荷转移动力学研究. Acta Physico-Chimica Sinica, 2024, 40(11): 2406027-. doi: 10.3866/PKU.WHXB202406027
-
[1]
Metrics
- PDF Downloads(587)
- Abstract views(2181)
- HTML views(19)