Citation: ZHANG Ying, YANG Pengyuan, LU Haojie. Recent progress in multi-stage mass spectrometry-based quantitative proteomics[J]. Chinese Journal of Chromatography, ;2013, 31(6): 503-509. doi: 10.3724/SP.J.1123.2013.03056 shu

Recent progress in multi-stage mass spectrometry-based quantitative proteomics

1.
Department of Chemistry and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China

Corresponding author: LU Haojie,
Received Date: 29 March 2013
Available Online: 16 April 2013
Fund Project: 国家重点基础研究发展计划(2012CB910602,2012AA020203) (2012CB910602,2012AA020203)国家自然科学基金项目(21025519,21005020,31070732) (21025519,21005020,31070732)上海市项目(11XD1400800,东方学者,B109). (11XD1400800,东方学者,B109)

With the development of proteome research, quantitative proteomics is becoming a very active area of proteomics research. The development of quantitative proteomics requires the advancement of a number of mass spectrometry (MS)-based quantitative techniques. According to the mass spectrometric stage at which the peptides are quantified, MS-based quantitative methods can be divided into two categories: MS¹-based quantitation and MSⁿ-based quantitation. In this review, the progress of MSⁿ-based quantitation approaches is summarized and the advantages and disadvantages are compared. The trend of MSⁿ-based quantitation is also prospected.
- proteomics,
- mass spectrometry (MS),
- quantitative,
- review
1. [1]
  [1] Ong S E, Mann M. Nat Chem Biol, 2005, 1(5): 252
2. [2]
  [2] Venable J D, Dong M Q, Wohlschlegel J, et al. Nat Methods, 2004, 1(1): 39
3. [3]
  [3] Zhang G, Neubert T A. Mol Cell Proteomics, 2006, 5(2): 401
4. [4]
  [4] White C A, Oey N, Emili A J. Proteome Res, 2009, 8(7): 3653
5. [5]
  [5] Ross P L, Huang Y N, Marchese J N, et al. Mol Cell Proteomics, 2004, 3(12): 1154
6. [6]
  [6] Thompson A, Schafer J, Kuhn K, et al. Anal Chem, 2003, 75(8): 1895
7. [7]
  [7] Murray C I, Uhrigshardt H, O'Meally R N, et al. Mol Cell Proteomics, 2012, 11(2): M111 013441
8. [8]
  [8] Iodoacetyl Tandem Mass Tag^TM (iodoTMT^TM) Reagents. [2013-03-28]. http://www.piercenet.com/instructions/2162387.pdf
9. [9]
  [9] Gandhi T, Puri P, Fusetti F, et al. J Proteome Res, 2012, 11(8): 4044
10. [10]
  [10] Pichler P, Kocher T, Holzmann J, et al. Anal Chem, 2010, 82(15): 6549
11. [11]
  [11] Pottiez G, Wiederin J, Fox H S, et al. J Proteome Res, 2012, 11(7): 3774
12. [12]
  [12] Rauniyar N, Gao B, McClatchy D B, et al. J Proteome Res, 2013, 12(2): 1031
13. [13]
  [13] Li S, Zeng D. Chem Commun(Camb), 2007, 43(21): 2181
14. [14]
  [14] Zeng D, Li S. Bioorg Med Chem Lett, 2009, 19(7): 2059
15. [15]
  [15] Zeng D, Li S. Chem Commun(Camb) 2009, 45(23): 3369
16. [16]
  [16] Zhang J, Wang Y, Li S. Anal Chem, 2010, 82(18): 7588
17. [17]
  [17] Xiang F, Ye H, Chen R, et al. Anal Chem, 2010, 82(7): 2817
18. [18]
  [18] Sohn C H, Lee J E, Sweredoski M J, et al. J Am Chem Soc, 2012, 134(5): 2672
19. [19]
  [19] Robinson R A, Evans A R. Anal Chem, 2012, 84(11): 4677
20. [20]
  [20] Dephoure N, Gygi S P. Sci Signal, 2012, 5(217): rs2
21. [21]
  [21] Werner T, Becher I, Sweetman G, et al. Anal Chem, 2012, 84(16): 7188
22. [22]
  [22] Zhang S, Liu X, Kang X, et al. Talanta, 2012, 91(14): 122
23. [23]
  [23] Colzani M, Schutz F, Potts A, et al. Mol Cell Proteomics, 2008, 7(5): 927
24. [24]
  [24] Wuhr M, Haas W, McAlister G C, et al. Anal Chem, 2012, 84(21): 9214
25. [25]
  [25] Ting L, Rad R, Gygi S P, et al. Nat Methods, 2011, 8(11): 937
26. [26]
  [26] Koehler C J, Strozynski M, Kozielski F, et al. J Proteome Res, 2009, 8(9): 4333
27. [27]
  [27] Koehler C J, Arntzen M O, Strozynski M, et al. Anal Chem, 2011, 83(12): 4775
28. [28]
  [28] Qin H, Wang F, Zhang Y, et al. Chem Commun(Camb), 2012, 48(50): 6265
29. [29]
  [29] Koehler C J, Arntzen M O, de Souza G A, et al. Anal Chem, 2013, 85(4): 2478
30. [30]
  [30] Nie A Y, Zhang L, Yan G Q, et al. Anal Chem, 2011, 83(15): 6026
31. [31]
  [31] Yang S J, Nie A Y, Zhang L, et al. Journal of Proteomics, 2012, 75(18): 5797
32. [32]
  [32] Yan W, Luo J, Robinson M, et al. Mol Cell Proteomics, 2011, 10(3): M110. 005611
33. [33]
  [33] Wenger C D, Lee M V, Hebert A S, et al. Nat Methods, 2011, 8(11): 933
34. [34]
  [34] Dayon L, Sonderegger B, Kussmann M. J Proteome Res, 2012, 11(10): 5081
1. [1]
  Wei Shao , Wanqun Zhang , Pingping Zhu , Wanqun Hu , Qiang Zhou , Weiwei Li , Kaiping Yang , Xisheng Wang . Design and Practice of Ideological and Political Cases in the Course of Instrument Analysis Experiment: Taking the GC-MS Experiment as an Example. University Chemistry, 2024, 39(2): 147-154. doi: 10.3866/PKU.DXHX202309048
2. [2]
  Xinyi Hong , Tailing Xue , Zhou Xu , Enrong Xie , Mingkai Wu , Qingqing Wang , Lina Wu . Non-Site-Specific Fluorescent Labeling of Proteins as a Chemical Biology Experiment. University Chemistry, 2024, 39(4): 351-360. doi: 10.3866/PKU.DXHX202310010
3. [3]
  Zian Lin , Yingxue Jin . Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry (MALDI-MS) for Disease Marker Screening and Identification: A Comprehensive Experiment Teaching Reform in Instrumental Analysis. University Chemistry, 2024, 39(11): 327-334. doi: 10.12461/PKU.DXHX202403066
4. [4]
  Min Gu , Huiwen Xiong , Liling Liu , Jilie Kong , Xueen Fang . Rapid Quantitative Detection of Procalcitonin by Microfluidics: An Instrumental Analytical Chemistry Experiment. University Chemistry, 2024, 39(4): 87-93. doi: 10.3866/PKU.DXHX202310120
5. [5]
  .
  CCS Chemistry 综述推荐│绿色氧化新思路：光/电催化助力有机物高效升级
  . CCS Chemistry, 2025, 7(10.31635/ccschem.024.202405369): -.
6. [6]
  Ling Bai , Limin Lu , Xiaoqiang Wang , Dongping Wu , Yansha Gao . Exploration and Practice of Teaching Reforms in “Quantitative Analytical Chemistry” under the Perspective of New Agricultural Science. University Chemistry, 2024, 39(3): 158-166. doi: 10.3866/PKU.DXHX202308101
7. [7]
  Hao Wu , Zhen Liu , Dachang Bai . ¹H NMR Spectrum of Amide Compounds. University Chemistry, 2024, 39(3): 231-238. doi: 10.3866/PKU.DXHX202309020
8. [8]
  Jiandong Liu , Zhijia Zhang , Mikhail Kamenskii , Filipp Volkov , Svetlana Eliseeva , Jianmin Ma . Research Progress on Cathode Electrolyte Interphase in High-Voltage Lithium Batteries. Acta Physico-Chimica Sinica, 2025, 41(2): 100011-. doi: 10.3866/PKU.WHXB202308048
9. [9]
  Chongjing Liu , Yujian Xia , Pengjun Zhang , Shiqiang Wei , Dengfeng Cao , Beibei Sheng , Yongheng Chu , Shuangming Chen , Li Song , Xiaosong Liu . Understanding Solid-Gas and Solid-Liquid Interfaces through Near Ambient Pressure X-Ray Photoelectron Spectroscopy. Acta Physico-Chimica Sinica, 2025, 41(2): 100013-. doi: 10.3866/PKU.WHXB202309036
10. [10]
  Tao Jiang , Yuting Wang , Lüjin Gao , Yi Zou , Bowen Zhu , Li Chen , Xianzeng Li . Experimental Design for the Preparation of Composite Solid Electrolytes for Application in All-Solid-State Batteries: Exploration of Comprehensive Chemistry Laboratory Teaching. University Chemistry, 2024, 39(2): 371-378. doi: 10.3866/PKU.DXHX202308057
11. [11]
  Zunxiang Zeng , Yuling Hu , Yufei Hu , Hua Xiao . Analysis of Plant Essential Oils by Supercritical CO₂Extraction with Gas Chromatography-Mass Spectrometry: An Instrumental Analysis Comprehensive Experiment Teaching Reform. University Chemistry, 2024, 39(3): 274-282. doi: 10.3866/PKU.DXHX202309069
12. [12]
  Mingyang Men , Jinghua Wu , Gaozhan Liu , Jing Zhang , Nini Zhang , Xiayin Yao . 液相法制备硫化物固体电解质及其在全固态锂电池中的应用. Acta Physico-Chimica Sinica, 2025, 41(1): 2309019-. doi: 10.3866/PKU.WHXB202309019
13. [13]
  Zhuoming Liang , Ming Chen , Zhiwen Zheng , Kai Chen . Multidimensional Studies on Ketone-Enol Tautomerism of 1,3-Diketones By ¹H NMR. University Chemistry, 2024, 39(7): 361-367. doi: 10.3866/PKU.DXHX202311029
14. [14]
  Lingbang Qiu , Jiangmin Jiang , Libo Wang , Lang Bai , Fei Zhou , Gaoyu Zhou , Quanchao Zhuang , Yanhua Cui . 原位电化学阻抗谱监测长寿命热电池Nb₁₂WO₃₃正极材料的高温双放电机制. Acta Physico-Chimica Sinica, 2025, 41(5): 100040-. doi: 10.1016/j.actphy.2024.100040
15. [15]
  Yongjie ZHANG , Bintong HUANG , Yueming ZHAI . Research progress of formation mechanism and characterization techniques of protein corona on the surface of nanoparticles. Chinese Journal of Inorganic Chemistry, 2024, 40(12): 2318-2334. doi: 10.11862/CJIC.20240247
16. [16]
  Zeyu XU , Anlei DANG , Bihua DENG , Xiaoxin ZUO , Yu LU , Ping YANG , Wenzhu YIN . Evaluation of the efficacy of graphene oxide quantum dots as an ovalbumin delivery platform and adjuvant for immune enhancement. Chinese Journal of Inorganic Chemistry, 2024, 40(6): 1065-1078. doi: 10.11862/CJIC.20240099
17. [17]
  Jin Tong , Shuyan Yu . Crystal Engineering for Supramolecular Chirality. University Chemistry, 2024, 39(3): 86-93. doi: 10.3866/PKU.DXHX202308113
18. [18]
  Xianfei Chen , Wentao Zhang , Haiying Du . Experimental Design of Computational Materials Science Based on Scientific Research Cases. University Chemistry, 2025, 40(3): 52-61. doi: 10.3866/PKU.DXHX202403112
19. [19]
  Jia Huo , Jia Li , Yongjun Li , Yuzhi Wang . Ideological and Political Design of Physical Chemistry Teaching: Chemical Potential of Any Component in an Ideal-Dilute Solution. University Chemistry, 2024, 39(2): 14-20. doi: 10.3866/PKU.DXHX202307075
20. [20]
  Hongwei Ma , Fang Zhang , Hui Ai , Niu Zhang , Shaochun Peng , Hui Li . Integrated Crystallographic Teaching with X-ray,TEM and STM. University Chemistry, 2024, 39(3): 5-17. doi: 10.3866/PKU.DXHX202308107

Get Citation

PDF

XML

Metrics

PDF Downloads(0)
Abstract views(238)
HTML views(10)

通讯作者: 陈斌, bchen63@163.com

1.
沈阳化工大学材料科学与工程学院沈阳 110142