Citation:
LIAO Li-Min, HUANG Xi, LI Jian-Feng. Structural Characterization and Acute Toxicity Simulation for Nitroaromatic Compounds[J]. Chinese Journal of Structural Chemistry,
;2016, 35(3): 449-456.
doi:
10.14102/j.cnki.0254-5861.2011-0904
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The three-dimensional holographic vector of atomic interaction field (3D-HoVAIF) is used to characterize the molecular structures of 45 nitroaromatic compounds. Two quantitative structure-toxicity relationship (QSAR) models are built up by stepwise regression (SMR), multiple linear regression (MLR) and partial least-squares regression (PLS). The correlation coefficients (R) of the models are 0.960 and 0.961, respectively. Then the models are evaluated by performing the cross-validation with the leave-one-out (LOO) procedure and the correlation coefficients (RCV) are 0.949 and 0.941, respectively. The results show that the descriptors can successfully describe the structures of organic compounds. The stability and predictability of the model are satisfactory.
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Keywords:
- nitroaromatic compounds,
- structural descriptor,
- toxicity,
- QSAR
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[1]
(1) Lang, P. Z.; Ding, Y. Z.; Long, F. S.; Wang, M. J.; Yuan, X.; Zhao, Y. A stufy of the pollution of toxic organic in the songhua river between middle reaches shaokou and songhua river village. Adv. Environ. Sci. 1993, 1, 47-55.
-
[2]
(2) Yan, X. F.; Xiao, H. M.; Ju, X. H.; Gong, X. D. QSAR study of nitroaromatic compounds toxicity to the tetrahymena pyriformis. Acta Chim. Sin. 2006, 64, 375-380.
-
[3]
(3) Yan, X. F.; Shu, Y. J.; Wang, L. J.; Xiao, H. M. DFT study on nitroaromatics toxicity to golden orfe fish. Acta Chim. Sin. 2007, 65, 1789-1796.
-
[4]
(4) Zhao, Y. H.; He, Y. B.; Wang, L. S. Predicting toxicities of substituted aromatic hydrocarbons to fish by toxicities to daphnia magna or photobacterium phosphoreum. Toxicol. Environ. Chem. 1995, 51, 191-195.
-
[5]
(5) Liao, L. M.; Qing, D. H.; Li, J. F.; Lei, G. D. Structural characterization and Kovats retention index prediction for oxygen-containing organic compounds. J. Mol. Struct. 2010, 975, 389-396.
-
[6]
(6) Liao, L. M.; Li, J. F.; Wang, B. Quantitative structure-retention relationship study on nitrogen-containing polycyclic aromatic compounds by using molecular electronegativity interaction vector. Chromatographia 2011, 74, 451-457.
-
[7]
(7) Bravig, G.; Gancia, E.; Mascagni, P.; Pegna, M.; Todeschini, R.; Zaliani, A. MS-WHIM, new 3D theoretical descriptors derived from molecular surface properties; a comparative 3D QSAR study in a series of steroids. J. Comput-Aided Mol. Des. 1997, 11, 79-92.
-
[8]
(8) Lu, Y. K.; Wang, J.; Hu, Y.; Lin, Y.; Lin, Z. H. Molecular modeling studies of vascular endothelial growth factor receptor tyrosine Kinase inhibitors combining molecular docking and 3D-QSAR methods. Chin. J. Struct. Chem. 2013, 32, 679-694.
-
[9]
(9) Sun, J. Y.; Wang, J. C.; Mei, H. QSAR and pharmacophore studies of thiazolidine-4-carboxylic acid derivatives as novel influenza neuraminidase inhibitors using HQSAR, topomer CoMFA and CoMSIA. Chin. J. Struct. Chem. 2013, 32, 744-750.
-
[10]
(10) Zhou, D. Y.; Du, Z. Y.; Tang, Z. K.; Zheng, X.; Ding, N.; Zheng, J. X.; Wang, H.; Zhang, K.; Allan, H. Comparative molecular field analysis (CoMFA) of curcumin-related compounds for anticancer activity. Chin. J. Struct. Chem. 2014, 33, 179-188.
-
[11]
(11) Gu, Y. L.; Tao, J. Q.; Fei, Z. H. QSAR study on the acute toxicity of nitroaromatic compounds to the tetrahymena pyriformis. Chem. Res. Appl. 2009, 21, 234-238.
-
[12]
(12) Zhou, P.; Tian, F. F.; Li, Z. L. Three dimensional holographic vector of atomic interaction field (3D-HoVIAF). Chemometr. Intell. Lab. Syst. 2007, 87, 114-128.
-
[13]
(13) Levitt, M.; Perutz, M. F. Aromatic rings act as hydrogen bond acceptors. J. Mol. Biol. 1988, 201, 751-754.
-
[14]
(14) Hahn, M. Receptor surface models. 1. Definition and construction. J. Med. Chem. 1995, 38, 2080-2090.
-
[15]
(15) Kellogg, G. E.; Semus, S. F.; Abraham, D. J. HINT-a new method of empirical hydrophobic field calculation for CoMFA. J. Comput. Aided Mol. Des. 1991, 5, 545-552.
-
[16]
(16) Wireko, F. C.; Kellogg, G. E.; Abraham, D. J. Allosteric modifiers of hemoglobin. 2. crystallographically determined binding sites and hydrophobic binding/interaction analysis of novel hemoglobin oxygen effectors. J. Med. Chem. 1991, 34, 758-767.
-
[17]
(17) Kellogg, G. E.; Joshi, G. S.; Abraham, D. J. New tools for modeling and understanding hydrophobicity and hydrophobic interactions. Med. Chem. Res. 1992, 1, 444-453.
-
[18]
(18) Kellogg, G. E.; Abraham, D. J. Key, lock, locksmith. Complementary hydrophobicity map predictions of drug structure from a known receptor/receptor structure from known drugs. J. Mol. Graph. 1992, 10, 212-217.
-
[19]
(19) Nayak, V. R.; Kellogg, G. E. Cyclodextrin-barbiturate inclusion complexes: a CoMFA/HINT 3-D QSAR study. Med. Chem. Res. 1994, 3, 491-502.
-
[20]
(20) Hasel, W.; Hendrikson, T. F.; Still, W. C. A rapid approximation to the solvent accessible surface areas of atoms. Tetrahed. Comp. Method. 1988, 1, 103-116.
-
[21]
(21) Pei, J.; Wang, Q.; Zhou, J.; Lai, L. Estimating protein-ligand binding free energy: atomic solvation parameters for partition coefficient and solvation free energy calculation. Proteins 2004, 57, 651-664.
-
[22]
(22) Sung-sun, S.; Karplus, M. A comparative study of ligand-receptor complex binding affinity prediction methods based on glycogen phosphorylase inhibitors. J. Comput. Aided Mol. Des. 1999, 13, 243-258.
-
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