Citation: LIAO Li-Min, HUANG Xi, LI Jian-Feng. Structural Characterization and Acute Toxicity Simulation for Nitroaromatic Compounds[J]. Chinese Journal of Structural Chemistry, ;2016, 35(3): 449-456. doi: 10.14102/j.cnki.0254-5861.2011-0904 shu

Structural Characterization and Acute Toxicity Simulation for Nitroaromatic Compounds

  • Received Date: 20 June 2015
    Available Online: 17 November 2015

    Fund Project: This work was supported by the Youth Foundation of Education Bureau, Sichuan Province (13ZB0003) (13ZB0003)

  • The three-dimensional holographic vector of atomic interaction field (3D-HoVAIF) is used to characterize the molecular structures of 45 nitroaromatic compounds. Two quantitative structure-toxicity relationship (QSAR) models are built up by stepwise regression (SMR), multiple linear regression (MLR) and partial least-squares regression (PLS). The correlation coefficients (R) of the models are 0.960 and 0.961, respectively. Then the models are evaluated by performing the cross-validation with the leave-one-out (LOO) procedure and the correlation coefficients (RCV) are 0.949 and 0.941, respectively. The results show that the descriptors can successfully describe the structures of organic compounds. The stability and predictability of the model are satisfactory.
  • 加载中
    1. [1]

      (1) Lang, P. Z.; Ding, Y. Z.; Long, F. S.; Wang, M. J.; Yuan, X.; Zhao, Y. A stufy of the pollution of toxic organic in the songhua river between middle reaches shaokou and songhua river village. Adv. Environ. Sci. 1993, 1, 47-55.

    2. [2]

      (2) Yan, X. F.; Xiao, H. M.; Ju, X. H.; Gong, X. D. QSAR study of nitroaromatic compounds toxicity to the tetrahymena pyriformis. Acta Chim. Sin. 2006, 64, 375-380.

    3. [3]

      (3) Yan, X. F.; Shu, Y. J.; Wang, L. J.; Xiao, H. M. DFT study on nitroaromatics toxicity to golden orfe fish. Acta Chim. Sin. 2007, 65, 1789-1796.

    4. [4]

      (4) Zhao, Y. H.; He, Y. B.; Wang, L. S. Predicting toxicities of substituted aromatic hydrocarbons to fish by toxicities to daphnia magna or photobacterium phosphoreum. Toxicol. Environ. Chem. 1995, 51, 191-195.

    5. [5]

      (5) Liao, L. M.; Qing, D. H.; Li, J. F.; Lei, G. D. Structural characterization and Kovats retention index prediction for oxygen-containing organic compounds. J. Mol. Struct. 2010, 975, 389-396.

    6. [6]

      (6) Liao, L. M.; Li, J. F.; Wang, B. Quantitative structure-retention relationship study on nitrogen-containing polycyclic aromatic compounds by using molecular electronegativity interaction vector. Chromatographia 2011, 74, 451-457.

    7. [7]

      (7) Bravig, G.; Gancia, E.; Mascagni, P.; Pegna, M.; Todeschini, R.; Zaliani, A. MS-WHIM, new 3D theoretical descriptors derived from molecular surface properties; a comparative 3D QSAR study in a series of steroids. J. Comput-Aided Mol. Des. 1997, 11, 79-92.

    8. [8]

      (8) Lu, Y. K.; Wang, J.; Hu, Y.; Lin, Y.; Lin, Z. H. Molecular modeling studies of vascular endothelial growth factor receptor tyrosine Kinase inhibitors combining molecular docking and 3D-QSAR methods. Chin. J. Struct. Chem. 2013, 32, 679-694.

    9. [9]

      (9) Sun, J. Y.; Wang, J. C.; Mei, H. QSAR and pharmacophore studies of thiazolidine-4-carboxylic acid derivatives as novel influenza neuraminidase inhibitors using HQSAR, topomer CoMFA and CoMSIA. Chin. J. Struct. Chem. 2013, 32, 744-750.

    10. [10]

      (10) Zhou, D. Y.; Du, Z. Y.; Tang, Z. K.; Zheng, X.; Ding, N.; Zheng, J. X.; Wang, H.; Zhang, K.; Allan, H. Comparative molecular field analysis (CoMFA) of curcumin-related compounds for anticancer activity. Chin. J. Struct. Chem. 2014, 33, 179-188.

    11. [11]

      (11) Gu, Y. L.; Tao, J. Q.; Fei, Z. H. QSAR study on the acute toxicity of nitroaromatic compounds to the tetrahymena pyriformis. Chem. Res. Appl. 2009, 21, 234-238.

    12. [12]

      (12) Zhou, P.; Tian, F. F.; Li, Z. L. Three dimensional holographic vector of atomic interaction field (3D-HoVIAF). Chemometr. Intell. Lab. Syst. 2007, 87, 114-128.

    13. [13]

      (13) Levitt, M.; Perutz, M. F. Aromatic rings act as hydrogen bond acceptors. J. Mol. Biol. 1988, 201, 751-754.

    14. [14]

      (14) Hahn, M. Receptor surface models. 1. Definition and construction. J. Med. Chem. 1995, 38, 2080-2090.

    15. [15]

      (15) Kellogg, G. E.; Semus, S. F.; Abraham, D. J. HINT-a new method of empirical hydrophobic field calculation for CoMFA. J. Comput. Aided Mol. Des. 1991, 5, 545-552.

    16. [16]

      (16) Wireko, F. C.; Kellogg, G. E.; Abraham, D. J. Allosteric modifiers of hemoglobin. 2. crystallographically determined binding sites and hydrophobic binding/interaction analysis of novel hemoglobin oxygen effectors. J. Med. Chem. 1991, 34, 758-767.

    17. [17]

      (17) Kellogg, G. E.; Joshi, G. S.; Abraham, D. J. New tools for modeling and understanding hydrophobicity and hydrophobic interactions. Med. Chem. Res. 1992, 1, 444-453.

    18. [18]

      (18) Kellogg, G. E.; Abraham, D. J. Key, lock, locksmith. Complementary hydrophobicity map predictions of drug structure from a known receptor/receptor structure from known drugs. J. Mol. Graph. 1992, 10, 212-217.

    19. [19]

      (19) Nayak, V. R.; Kellogg, G. E. Cyclodextrin-barbiturate inclusion complexes: a CoMFA/HINT 3-D QSAR study. Med. Chem. Res. 1994, 3, 491-502.

    20. [20]

      (20) Hasel, W.; Hendrikson, T. F.; Still, W. C. A rapid approximation to the solvent accessible surface areas of atoms. Tetrahed. Comp. Method. 1988, 1, 103-116.

    21. [21]

      (21) Pei, J.; Wang, Q.; Zhou, J.; Lai, L. Estimating protein-ligand binding free energy: atomic solvation parameters for partition coefficient and solvation free energy calculation. Proteins 2004, 57, 651-664.

    22. [22]

      (22) Sung-sun, S.; Karplus, M. A comparative study of ligand-receptor complex binding affinity prediction methods based on glycogen phosphorylase inhibitors. J. Comput. Aided Mol. Des. 1999, 13, 243-258.

  • 加载中
    1. [1]

      Yin-Hang Chai Li-Long Dang . New structural breakthrough and topological transformation of homogeneous metalla[4]catenane compounds. Chinese Journal of Structural Chemistry, 2024, 43(10): 100322-100322. doi: 10.1016/j.cjsc.2024.100322

    2. [2]

      Mei PengWei-Min He . Photochemical synthesis and group transfer reactions of azoxy compounds. Chinese Chemical Letters, 2024, 35(8): 109899-. doi: 10.1016/j.cclet.2024.109899

    3. [3]

      Chen Lu Zefeng Yu Jing Cao . Advancement in porphyrin/phthalocyanine compounds-based perovskite solar cells. Chinese Journal of Structural Chemistry, 2024, 43(3): 100240-100240. doi: 10.1016/j.cjsc.2024.100240

    4. [4]

      Zhenyang Lin . A classification scheme for inorganic cluster compounds based on their electronic structures and bonding characteristics. Chinese Journal of Structural Chemistry, 2024, 43(5): 100254-100254. doi: 10.1016/j.cjsc.2024.100254

    5. [5]

      Dong-Sheng DengSu-Qin TangYong-Tu YuanDing-Xiong XieZhi-Yuan ZhuYue-Mei HuangYun-Lin Liu . C-F insertion reaction sheds new light on the construction of fluorinated compounds. Chinese Chemical Letters, 2024, 35(8): 109417-. doi: 10.1016/j.cclet.2023.109417

    6. [6]

      Yaping ZhangWei ZhouMingchun GaoTianqi LiuBingxin LiuChang-Hua DingBin Xu . Oxidative cyclization of allyl compounds and isocyanide: A facile entry to polysubstituted 2-cyanopyrroles. Chinese Chemical Letters, 2024, 35(4): 108836-. doi: 10.1016/j.cclet.2023.108836

    7. [7]

      Zeyu JiangYadi WangChangwei ChenChi He . Progress and challenge of functional single-atom catalysts for the catalytic oxidation of volatile organic compounds. Chinese Chemical Letters, 2024, 35(9): 109400-. doi: 10.1016/j.cclet.2023.109400

    8. [8]

      Jingxuan LiuShiqi ZhaoXiang Wu . Flexible electrochemical capacitor based NiMoSSe electrode material with superior cycling and structural stability. Chinese Chemical Letters, 2024, 35(7): 109059-. doi: 10.1016/j.cclet.2023.109059

    9. [9]

      Jianmei HanPeng WangHua ZhangNing SongXuguang AnBaojuan XiShenglin Xiong . Performance optimization of chalcogenide catalytic materials in lithium-sulfur batteries: Structural and electronic engineering. Chinese Chemical Letters, 2024, 35(7): 109543-. doi: 10.1016/j.cclet.2024.109543

    10. [10]

      Li LiFanpeng ChenBohang ZhaoYifu Yu . Understanding of the structural evolution of catalysts and identification of active species during CO2 conversion. Chinese Chemical Letters, 2024, 35(4): 109240-. doi: 10.1016/j.cclet.2023.109240

    11. [11]

      Jie RenHao ZongYaqun HanTianyi LiuShufen ZhangQiang XuSuli Wu . Visual identification of silver ornament by the structural color based on Mie scattering of ZnO spheres. Chinese Chemical Letters, 2024, 35(9): 109350-. doi: 10.1016/j.cclet.2023.109350

    12. [12]

      Mengjun Zhao Yuhao Guo Na Li Tingjiang Yan . Deciphering the structural evolution and real active ingredients of iron oxides in photocatalytic CO2 hydrogenation. Chinese Journal of Structural Chemistry, 2024, 43(8): 100348-100348. doi: 10.1016/j.cjsc.2024.100348

    13. [13]

      Zhi-Yuan YueHua-Kai LiNa WangShan-Shan LiuLe-Ping MiaoHeng-Yun YeChao Shi . Dehydration-triggered structural phase transition-associated ferroelectricity in a hybrid perovskite-type crystal. Chinese Chemical Letters, 2024, 35(10): 109355-. doi: 10.1016/j.cclet.2023.109355

    14. [14]

      Hualei XuManman HanHaiqiang LiuLiang QinLulu ChenHao HuRan WuChenyu YangHua GuoJinrong LiJinxiang FuQichen HaoYijun ZhouJinchao FengXiaodong Wang . 4-Nitrocatechol as a novel matrix for low-molecular-weight compounds in situ detection and imaging in biological tissues by MALDI-MSI. Chinese Chemical Letters, 2024, 35(6): 109095-. doi: 10.1016/j.cclet.2023.109095

    15. [15]

      Gaofeng WANGShuwen SUNYanfei ZHAOLixin MENGBohui WEI . Structural diversity and luminescence properties of three zinc coordination polymers based on bis(4-(1H-imidazol-1-yl)phenyl)methanone. Chinese Journal of Inorganic Chemistry, 2024, 40(5): 849-856. doi: 10.11862/CJIC.20230479

    16. [16]

      Maitri BhattacharjeeRekha Boruah SmritiR. N. Dutta PurkayasthaWaldemar ManiukiewiczShubhamoy ChowdhuryDebasish MaitiTamanna Akhtar . Synthesis, structural characterization, bio-activity, and density functional theory calculation on Cu(Ⅱ) complexes with hydrazone-based Schiff base ligands. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1409-1422. doi: 10.11862/CJIC.20240007

    17. [17]

      Le Ye Wei-Xiong Zhang . Structural phase transition in a new organic-inorganic hybrid post-perovskite: (N,N-dimethylpyrrolidinium)[Mn(N(CN)2)3]. Chinese Journal of Structural Chemistry, 2024, 43(6): 100257-100257. doi: 10.1016/j.cjsc.2024.100257

    18. [18]

      Ze-Yuan MaMei XiaoCheng-Kun LiAdedamola ShoberuJian-Ping ZouS-(1,3-Dioxoisoindolin-2-yl)O,O-diethyl phosphorothioate (SDDP): A practical electrophilic reagent for the phosphorothiolation of electron-rich compounds. Chinese Chemical Letters, 2024, 35(5): 109076-. doi: 10.1016/j.cclet.2023.109076

    19. [19]

      Yijia JiaoYuzhu LiYuting ZhouPeipei CenYi DingYan GuoXiangyu Liu . Structural evolution and zero-field SMM behaviour in ferromagnetically-coupled disk-type Co7 clusters bearing exclusively end-on azido bridges. Chinese Chemical Letters, 2024, 35(8): 109082-. doi: 10.1016/j.cclet.2023.109082

Metrics
  • PDF Downloads(0)
  • Abstract views(757)
  • HTML views(46)

通讯作者: 陈斌, bchen63@163.com
  • 1. 

    沈阳化工大学材料科学与工程学院 沈阳 110142

  1. 本站搜索
  2. 百度学术搜索
  3. 万方数据库搜索
  4. CNKI搜索
Address:Zhongguancun North First Street 2,100190 Beijing, PR China Tel: +86-010-82449177-888
Powered By info@rhhz.net

/

DownLoad:  Full-Size Img  PowerPoint
Return