

吡嗪缩氨基硫脲Ni(Ⅱ)/Co(Ⅲ)配合物的合成、结构和DNA结合性质
English
Syntheses, Crystal Structures and DNA-Binding Properties of Ni(Ⅱ)/Co(Ⅲ) Complexes with Pyrazine Thiosemicarbazone Ligand
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Key words:
- Co(Ⅲ) complex
- / DNA-binding
- / Ni(Ⅱ) complex
- / pyrazine
- / thiosemicarbazone
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Thiosemicarbazones (TSCs) and their metal complexes, especially the transition metal ones, have attracted intensity attention in the coordination chemistry because of their high biological and pharmaceutical activities, such as antibacterial, antiviral, antifungal, and antitumor activity[1]. On the other hand, pyrazine has been frequently used as key structural motif for the synthesis of various pharma-ceutical agents[2]. As a result, including our group′s work, thiosemicarbazones (TSCs) involving pyrazine and their complexes have been found to display considerable antitumor activity[3-10].
Nevertheless, it is noted that the biological activities of TSCs often show a high dependence on their substituent.In this regard, it seems necessary to facilitate the activity of TSCs metals by changing the substitutes of TSCs themselves[4, 11-12]. Herein a novel TSC (HL), namely 2-aceto-3-methylpyrazine N-(4-fluorophenyl)thiosemicarbazone, has been selected as the ligand.The structures and DNA-binding properties of its Ni(Ⅱ)/Co(Ⅲ) complexes have been discussed in detail.
1. Experimental
1.1 Materials and measurements
Solvents and starting materials for synthesis were purchased commercially and used as received.Elemental analysis was carried out on an Elemental Vario EL analyzer.The IR spectra (ν=4 000~400 cm-1) were determined by the KBr pressed disc method on a Bruker V70 FT-IR spectrophotometer.1H NMR spectra of HL was acquired with Bruker AV400 NMR instrument in DMSO-d6 solution with TMS as internal standard.The UV spectra were recorded on a Purkinje General TU-1800 spectrophotometer.The interactions between three compounds and ct-DNA are measured using literature method[13] via emission spectra on a Varian CARY Eclipse spectrophotometer.
1.2 Preparations of the ligand and complexes 1 and 2
As shown in Scheme 1, the ligand HL was prepared by condensation of 2-aceto-3-methylpyrazine (1.36 g, 0.01 mol) and 4-fluorophenyl thiosemicar-bazide (1.85 g, 0.01 mol) in ethanol solution (30 mL) with continuous stirring at room temperature for 3 h.Yield:2.08 g (82%). Elemental analysis Calcd. for C14H14N5SF(%): C, 55.44; H, 4.62; N, 23.10.Found(%):C, 55.62; H, 4.56; N, 22.99.FT-IR (cm-1):ν(C=S) 843, ν(C=N)imine 1 606, ν(C=N)pyrazine 1 546.1H NMR (400 MHz, DMSO-d6):δ 10.91 (s, 1H, NH), 10.01 (s, 1H, NH), 8.52~8.54 (m, 2H, pyrazine-H), 7.57~7.61 (m, 2H)/7.17~7.21 (m, 2H) for phenyl-H, 2.77 (3H, s, CH3), 2.44 (3H, s, CH3).
Scheme 1
Complexes 1 and 2 were generated by reaction of HL (5 mmol) with equimolar of Ni(OAc)2 and CoCl2 in CH3OH (10 mL) solution, respectively.Crystals of 1 and 2 suitable for X-ray diffraction analysis were obtained by evaporating the corresponding reaction solutions at room temperature.
1:brown blocks.Anal.Calcd.for C16H16O2N5SFNi(%):C, 45.70; H, 3.80; N, 16.66.Found(%):C, 45.56; H, 3.88; N, 16.73.FT-IR (cm-1):ν(C=S) 831, ν(C=N) 1 608, ν(C=N)pyrazine 1 543.
2:brown plates.Anal.Calcd.for C32H42O4N10F2S2 ClCo(%): C, 46.42; H, 5.07; N, 16.92.Found(%):C, 46.50; H, 4.97; N, 17.01.FT-IR (cm-1):ν(C=S) 836, ν(C=N) 1 618, ν(C=N)pyrazine 1 541.
1.3 X-ray crystallography
The X-ray diffraction measurement for complexes 1 (Size:0.10 mm×0.08 mm×0.08 mm) and 2 (Size:0.15 mm×0.14 mm×0.06 mm) was performed on a Bruker SMART APEX Ⅱ CCD diffractometer equipped with a graphite monochromatized Mo Kα radiation (λ=0.071 073 nm) by using φ-ω scan mode.Semi-empirical absorption correction was applied to the intensity data using the SADABS program[14]. The structures were solved by direct methods and refined by full matrix least-square on F2 using the SHELXTL-97 program[15]. All non-hydrogen atoms were refined anisotropically.All H atoms were positioned geometri-cally and refined using a riding model.Details of the crystal parameters, data collection and refinements for complexes 1 and 2 are summarized in Table 1.
Table 1
1 2 Empirical formula C16H16FN5NiO2S C32H42ClCoF2N10O4S2 Formula weight 420.11 827.26 T/K 296(2) 293(2) Crystal system Monoclinic Triclinic Space group P21/c P1 a/nm 1.152 32(13) 1.170 49(15) b/nm 0.870 16(10) 1.207 64(14) c/nm 1.766 5(2) 1.455 99(17) α/(°) 108.472(2) β/(°) 101.515(2) 95.138(2) γ/(°) 96.239(2) V/nm3 1.735 6(3) 1.923 6(4) Z 4 2 Dc/(g·cm-3) 1.608 1.428 Absorption coefficient/mm-1 1.270 0.684 F(000) 864.0 860 Reflection collected, Unique (Rint) 8 303, 3 058 (0.021 9) 9 851, 6 739 (0.015 7) Data, restraint, parameter 3 058, 0, 238 6 739, 0, 481 Goodness-of-fit (GOF) on F2 1.017 1.016 Final R indices [I>2σ(I)] R1=0.026 8, wR2=0.068 0 R1=0.035 4, wR2=0.087 9 R indices (all data) R1=0.033 1, wR2=0.071 8 R1=0.047 6, wR2=0.095 5 CCDC:1848437, 1; 1848438, 2.
2. Results and discussion
2.1 Crystal structures description
A diamond drawing for complexes 1 and 2 is shown in Fig. 1.Selected bond distances and angles are listed in Table 2.The lengths of C-S bond are in the range of 0.175 4(2)~0.175 0(2) nm in complexes 1 and 2, showing that the ligand HL has thiolated and deprotonated in both complexes[16].
Figure 1
Figure 1. ORTEP drawing of 1 (a) and 2 (c) with 30% thermal ellipsoids; (b) Zig-zag chain-like structure along b axis formed via N-H…O hydrogen bonds in complex 1; (d) Centrosymmetric supramolecular dimer in complex 2Hydrogen bonds shown in dashed line; H atoms for C-H bonds are omitted for clarity; Symmetry codes:
ⅰ 2-x, 0.5+y, 2.5-z; ⅱ 2-x,-0.5+y, 2.5-z; ⅲ 1-x, 1-y,-zTable 2
1 Ni1-N1 0.191 67(17) Ni1-N3 0.183 80(16) Ni1-S1 0.215 57(6) Ni1-O1 0.184 43(16) N1-Ni1-N3 82.49(7) O1-Ni1-S1 100.42(5) N3-Ni1-S1 87.74(5) N1-Ni1-S1 169.41(6) O1-Ni1-N3 170.78(8) O1-Ni1-N1 89.65(7) 2 Co1-N3 0.187 97(17) Co1-N8 0.188 51(17) Co1-N1 0.194 85(19) Co1-N6 0.196 19(19) Co1-S1 0.222 10(7) Co1-S2 0.222 37(7) N3-Co1-N8 178.93(8) N3-Co1-N1 81.80(8) N8-Co1-N1 99.27(8) N3-Co1-N6 98.29(8) N8-Co1-N6 81.74(8) N1-Co1-N6 88.45(8) N3-Co1-S1 86.47(6) N8-Co1-S1 92.46(6) N1-Co1-S1 168.16(6) N6-Co1-S1 91.73(6) N3-Co1-S2 93.68(6) N8-Co1-S2 86.33(6) N1-Co1-S2 90.87(6) N6-Co1-S2 167.79(6) S1-Co1-S2 91.42(3) As shown in Fig. 1a, the central Ni(Ⅱ) ion in complex 1 is surrounded by one anionic TSC ligand with NNS donor set and one monodentate acetate, giving a slightly distorted planar geometry (RMS deviation:0.001 85 nm).The distances of coordination bonds were in the normal range (0.183 80(16)~ 0.215 57(6) nm).In the crystal, the intermolecular N-H…O hydrogen bonds (N5-H5…O2i, with D…A distance being 0.291 8(2) nm, D-H…A angle being 152.0°; Symmetry codes:i 2-x, 0.5+y, 2.5-z) link the molecules into zig-zag chains along b axis, as illustrated in Fig. 1b.
The asymmetric unit of complex 2 contains one discrete cationic Co(Ⅲ) complex (Fig. 1c), in which the center Co(Ⅲ) ion is coordinated by two tridentate TSC ligands, and thus possessing a distorted octahedron coordination geometry.Although complex 2 is prepared using CoCl2, there exists one free chloride anion in the outside of the complex for charge balance.This is a normal phenomenon in the Co(Ⅲ)complexes with TSC ligands in the literature[17]. In the solid state, crystal methanol molecules and free chloride anions link the complex cations into a centrosymmetric supramole-cular dimer (Fig. 1d) through intermolecular O-H…O (O4-H4…O3, with D…A distance being 0.281 9(3) nm, D-H…A angle being 160.2°), N-H…O (N5-H5…O2, with D…A distance being 0.283 2(3) nm, D-H…A angle being 173.0°; N10-H10…O4, with D…A distance being 0.291 8(3) nm, D-H…A angle being 175.0°) and O-H…Cl hydrogen bonds (O1-H1…Cl1, with D…A distance being 0.320 0(3) nm, D-H…A angle being 164.7°; O2-H2…Cl1, with D…A distance being 0.312 0(3) nm, D-H…A angle being 172.6°; O1-H1…Cl1ⅲ, with D…A distance being 0.313 2(3) nm, D-H…A angle being 171.9°; Symmetry codes: ⅲ 1-x, 1-y,-z).
2.2 IR spectra
The most useful infrared spectral bands for determining the mode of coordination of the ligands are the ν(C=N)imine, ν(C=N, pyrazine) and ν(C=S).Such three bands of the free TSC ligand is found at 1 606, 1 546 and 843 nm-1, while they shift to lower frequency in complexes 1 and 2, clearly indicating the coordina-tion of imine nitrogen, pyrazine nitrogen and sulfur atoms[13, 18].It is in accordance with the X-ray diffraction analysis result.
2.3 UV spectra
The UV spectra of the ligand HL, complexes 1 and 2 in CH3OH solution (Concentration:10 μmol· L-1) were measured at room temperature (Fig. 2).The spectrum of HL features only one main band located around 305 nm (ε=59 100 L·mol-1·cm-1), which could be contributed to the characteristic π-π* transition of pyrazine[13]. In complexes 1 and 2, this band blue-shifted to 253 nm (ε=34 900 L·mol-1·cm-1) and 255 nm (ε=89 600 L·mol-1·cm-1).Moreover, complexes 1 and 2 exhibit new peaks located at 395 nm (ε=22 800 L·mol-1·cm-1) and 407 nm (ε=41 600 L·mol-1·cm-1), respectively, corresponding to the ligand-to-metal charge transfer (LMCT)[19].All facts support the coor-dination of ligand HL in both complexes.
Figure 2
2.4 EB-DNA binding study by fluorescence spectrum
It is well known that EB can intercalate nonspecifically into DNA, which causes it to fluoresce strongly.Competitive binding of other drugs to DNA and EB will result in displacement of bound EB and a decrease in the fluorescence intensity[18-19].The effects of the ligand and complexes on the fluorescence spectra of EB-DNA system are presented in Fig. 3, the fluorescence intensities of EB bound to ct-DNA at about 600 nm show remarkable decreasing trends with the increasing concentration of the tested compounds, indicating that some EB molecules are released into solution after the exchange with the compounds.The quenching of EB bound to DNA by the compounds is in agreement with the linear Stern-Volmer equation: I0/I=1+Ksqr[20], where I0 and I represent the fluorescence intensities in the absence and presence of quencher, respectively; Ksq is the linear Stern-Volmer quenching constant; r is the ratio of the concentration of quencher and DNA.In the quenching plots of I0/I versus r, Ksq values are given by the slopes.The Ksq values are 0.860, 1.382 and 1.659 for the ligand HL, complexes 1 and 2, respectively.The results indicate that interactions of the complexes with DNA are stronger than that of the ligand HL, probably due to the higher rigidity and metal-ligand synergism effect of the complexes.
Figure 3
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Figure 1 ORTEP drawing of 1 (a) and 2 (c) with 30% thermal ellipsoids; (b) Zig-zag chain-like structure along b axis formed via N-H…O hydrogen bonds in complex 1; (d) Centrosymmetric supramolecular dimer in complex 2
Hydrogen bonds shown in dashed line; H atoms for C-H bonds are omitted for clarity; Symmetry codes:
ⅰ 2-x, 0.5+y, 2.5-z; ⅱ 2-x,-0.5+y, 2.5-z; ⅲ 1-x, 1-y,-zTable 1. Crystal data and structure refinement for complexes 1 and 2
1 2 Empirical formula C16H16FN5NiO2S C32H42ClCoF2N10O4S2 Formula weight 420.11 827.26 T/K 296(2) 293(2) Crystal system Monoclinic Triclinic Space group P21/c P1 a/nm 1.152 32(13) 1.170 49(15) b/nm 0.870 16(10) 1.207 64(14) c/nm 1.766 5(2) 1.455 99(17) α/(°) 108.472(2) β/(°) 101.515(2) 95.138(2) γ/(°) 96.239(2) V/nm3 1.735 6(3) 1.923 6(4) Z 4 2 Dc/(g·cm-3) 1.608 1.428 Absorption coefficient/mm-1 1.270 0.684 F(000) 864.0 860 Reflection collected, Unique (Rint) 8 303, 3 058 (0.021 9) 9 851, 6 739 (0.015 7) Data, restraint, parameter 3 058, 0, 238 6 739, 0, 481 Goodness-of-fit (GOF) on F2 1.017 1.016 Final R indices [I>2σ(I)] R1=0.026 8, wR2=0.068 0 R1=0.035 4, wR2=0.087 9 R indices (all data) R1=0.033 1, wR2=0.071 8 R1=0.047 6, wR2=0.095 5 Table 2. Selected bond lengths (nm) and angles (°) in complexes 1 and 2
1 Ni1-N1 0.191 67(17) Ni1-N3 0.183 80(16) Ni1-S1 0.215 57(6) Ni1-O1 0.184 43(16) N1-Ni1-N3 82.49(7) O1-Ni1-S1 100.42(5) N3-Ni1-S1 87.74(5) N1-Ni1-S1 169.41(6) O1-Ni1-N3 170.78(8) O1-Ni1-N1 89.65(7) 2 Co1-N3 0.187 97(17) Co1-N8 0.188 51(17) Co1-N1 0.194 85(19) Co1-N6 0.196 19(19) Co1-S1 0.222 10(7) Co1-S2 0.222 37(7) N3-Co1-N8 178.93(8) N3-Co1-N1 81.80(8) N8-Co1-N1 99.27(8) N3-Co1-N6 98.29(8) N8-Co1-N6 81.74(8) N1-Co1-N6 88.45(8) N3-Co1-S1 86.47(6) N8-Co1-S1 92.46(6) N1-Co1-S1 168.16(6) N6-Co1-S1 91.73(6) N3-Co1-S2 93.68(6) N8-Co1-S2 86.33(6) N1-Co1-S2 90.87(6) N6-Co1-S2 167.79(6) S1-Co1-S2 91.42(3) -

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