Citation: YIN Yan-Dong, ZHOU Xiao-Xue, ZHAO Xin-Sheng. Maximum Entropy Method for Analyses of Fluorescence Correlation Spectra of Oli nucleotide Intra-Chain Collision[J]. Acta Physico-Chimica Sinica, 2010, 26(04): 1087-1092. doi: 10.3866/PKU.WHXB20100408
最大熵法分析寡聚核苷酸链内碰撞的荧光相关光谱
准确地由荧光相关光谱(FCS)的实验数据提取动力学信息一直是一个挑战. 本文对比了三种主要的方法: 依赖于模型的多指数函数法, 经验的拓展指数函数法和不依赖于模型的最大熵法. 多指数函数法的物理意义直接但在复杂体系中难以应用和解释. 拓展指数函数法简单易行但其物理意义含混不清. 最大熵法不依赖于具体的物理模型但拟合结果对实验噪音很敏感. 经研究我们发现一个好的选择是将最大熵法和多指数函数法结合在一起使用. 对寡聚核苷酸链内碰撞荧光相关光谱的研究发现, 在单链DNA中可以形成碱基对时, 有两个并行的链内碰撞反应. 以前的拓展指数函数法分析则不能提供这样的信息. 我们建议在荧光相关光谱研究中审慎地使用最大熵法.
English
Maximum Entropy Method for Analyses of Fluorescence Correlation Spectra of Oli nucleotide Intra-Chain Collision
It has been a challenge to accurately extract dynamic information from experimental fluorescence correlation spectroscopy (FCS) data. In this paper, we compare three major fitting methods: the model-dependent multiple exponential function (MultiExp), the empirical stretched exponential function (StreExp), and the exponential function based on the model-free maximumentropy method (MemExp). MultiExp has straight forward physical significance but it is difficult to implement and interpret in a complex system. StreExp has simple form and is easy to use but its physical picture is obscure. MultiExp is model free but its results are sensitive to experimental noise. A od choice seems to be a combination of MemExp and MultiExp. In our example, we have unraveled that two independent processes exist in the intra-chain collision of a single-stranded DNA when base pair formation is possible, which has not been observed by previous investigators. MemExp is recommended for the FCS data analysis, although caution should be exercised in the practice.
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